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Mutant Information

Mutant Name	FN1048-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1048-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 43

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 10527512 A-T Hetero INTERGENIC
SBS Chr1 21187094 T-G Hetero INTERGENIC
SBS Chr1 24458062 C-T Hetero UTR_3_PRIME
SBS Chr1 26057230 G-T Hetero INTERGENIC
SBS Chr1 26057231 G-T Hetero INTERGENIC
SBS Chr1 30623896 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake01g303400
SBS Chr2 5617749 T-A Homo INTRON
SBS Chr2 22682482 C-T Hetero INTERGENIC
SBS Chr2 23363279 A-T Hetero INTERGENIC
SBS Chr2 31222038 T-A Homo INTERGENIC
SBS Chr3 18222520 T-C Hetero INTERGENIC
SBS Chr3 20627457 C-T Hetero INTERGENIC
SBS Chr3 34357426 A-T Hetero INTRON
SBS Chr3 36440602 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g404600
SBS Chr4 13386819 C-A Homo INTERGENIC
SBS Chr4 27649225 A-G Hetero INTERGENIC
SBS Chr4 35191049 T-G Hetero INTERGENIC
SBS Chr5 2743154 G-A Homo INTERGENIC
SBS Chr5 5298478 T-A Hetero INTERGENIC
SBS Chr5 27853425 A-T Hetero INTERGENIC
SBS Chr6 10249320 A-G Hetero INTERGENIC
SBS Chr6 12680878 C-G Hetero INTERGENIC
SBS Chr6 15203399 T-A Hetero INTERGENIC
SBS Chr6 16045984 A-G Hetero INTERGENIC
SBS Chr6 24747074 T-A Hetero INTERGENIC
SBS Chr6 24989318 G-A Hetero INTERGENIC
SBS Chr7 1136746 A-G Hetero INTERGENIC
SBS Chr7 3283150 C-G Hetero INTRON
SBS Chr7 7810529 C-T Hetero INTERGENIC
SBS Chr7 9526603 T-C Hetero INTERGENIC
SBS Chr7 10326095 G-T Hetero INTERGENIC
SBS Chr7 27252874 C-T Hetero INTERGENIC
SBS Chr8 7866534 T-C Homo INTERGENIC
SBS Chr8 12991909 T-C Hetero INTRON
SBS Chr8 15351552 C-T Homo INTERGENIC
SBS Chr9 7826758 G-A Homo INTERGENIC
SBS Chr9 11734395 T-C Homo INTRON
SBS Chr11 9213034 A-T Hetero INTERGENIC
SBS Chr11 16875927 C-T Hetero INTERGENIC
SBS Chr11 27294093 G-A Hetero INTERGENIC
SBS Chr12 2879132 T-C Hetero INTERGENIC
SBS Chr12 9611462 G-T Hetero INTERGENIC
SBS Chr12 10391443 T-C Hetero INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 642343 642364 21
Deletion Chr2 8012766 8012771 5
Deletion Chr5 8914729 8914730 1
Deletion Chr11 10145001 10530000 384999 14
Deletion Chr11 10535001 10779000 243999 12
Deletion Chr2 10945171 10945172 1
Deletion Chr5 12009971 12009979 8
Deletion Chr8 13490546 13490548 2
Deletion Chr11 14772001 15431000 658999 21
Deletion Chr2 15798190 15798191 1
Deletion Chr6 20562561 20562562 1
Deletion Chr1 31136001 31188000 51999 10
Deletion Chr4 34031328 34031329 1
Deletion Chr4 36127584 36127586 2

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 6846439 6916250 OsKitaake05g068900
Inversion Chr5 6854465 6916257
Inversion Chr11 8180252 9152848
Inversion Chr11 10144797 10149379
Inversion Chr11 14773520 15540427
Inversion Chr11 15433845 15540459 OsKitaake11g124550

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10527512	A-T	Hetero	INTERGENIC
SBS	Chr1	21187094	T-G	Hetero	INTERGENIC
SBS	Chr1	24458062	C-T	Hetero	UTR_3_PRIME
SBS	Chr1	26057230	G-T	Hetero	INTERGENIC
SBS	Chr1	26057231	G-T	Hetero	INTERGENIC
SBS	Chr1	30623896	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g303400
SBS	Chr2	5617749	T-A	Homo	INTRON
SBS	Chr2	22682482	C-T	Hetero	INTERGENIC
SBS	Chr2	23363279	A-T	Hetero	INTERGENIC
SBS	Chr2	31222038	T-A	Homo	INTERGENIC
SBS	Chr3	18222520	T-C	Hetero	INTERGENIC
SBS	Chr3	20627457	C-T	Hetero	INTERGENIC
SBS	Chr3	34357426	A-T	Hetero	INTRON
SBS	Chr3	36440602	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g404600
SBS	Chr4	13386819	C-A	Homo	INTERGENIC
SBS	Chr4	27649225	A-G	Hetero	INTERGENIC
SBS	Chr4	35191049	T-G	Hetero	INTERGENIC
SBS	Chr5	2743154	G-A	Homo	INTERGENIC
SBS	Chr5	5298478	T-A	Hetero	INTERGENIC
SBS	Chr5	27853425	A-T	Hetero	INTERGENIC
SBS	Chr6	10249320	A-G	Hetero	INTERGENIC
SBS	Chr6	12680878	C-G	Hetero	INTERGENIC
SBS	Chr6	15203399	T-A	Hetero	INTERGENIC
SBS	Chr6	16045984	A-G	Hetero	INTERGENIC
SBS	Chr6	24747074	T-A	Hetero	INTERGENIC
SBS	Chr6	24989318	G-A	Hetero	INTERGENIC
SBS	Chr7	1136746	A-G	Hetero	INTERGENIC
SBS	Chr7	3283150	C-G	Hetero	INTRON
SBS	Chr7	7810529	C-T	Hetero	INTERGENIC
SBS	Chr7	9526603	T-C	Hetero	INTERGENIC
SBS	Chr7	10326095	G-T	Hetero	INTERGENIC
SBS	Chr7	27252874	C-T	Hetero	INTERGENIC
SBS	Chr8	7866534	T-C	Homo	INTERGENIC
SBS	Chr8	12991909	T-C	Hetero	INTRON
SBS	Chr8	15351552	C-T	Homo	INTERGENIC
SBS	Chr9	7826758	G-A	Homo	INTERGENIC
SBS	Chr9	11734395	T-C	Homo	INTRON
SBS	Chr11	9213034	A-T	Hetero	INTERGENIC
SBS	Chr11	16875927	C-T	Hetero	INTERGENIC
SBS	Chr11	27294093	G-A	Hetero	INTERGENIC
SBS	Chr12	2879132	T-C	Hetero	INTERGENIC
SBS	Chr12	9611462	G-T	Hetero	INTERGENIC
SBS	Chr12	10391443	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	642343	642364	21
Deletion	Chr2	8012766	8012771	5
Deletion	Chr5	8914729	8914730	1
Deletion	Chr11	10145001	10530000	384999	14
Deletion	Chr11	10535001	10779000	243999	12
Deletion	Chr2	10945171	10945172	1
Deletion	Chr5	12009971	12009979	8
Deletion	Chr8	13490546	13490548	2
Deletion	Chr11	14772001	15431000	658999	21
Deletion	Chr2	15798190	15798191	1
Deletion	Chr6	20562561	20562562	1
Deletion	Chr1	31136001	31188000	51999	10
Deletion	Chr4	34031328	34031329	1
Deletion	Chr4	36127584	36127586	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	6846439	6916250	OsKitaake05g068900
Inversion	Chr5	6854465	6916257
Inversion	Chr11	8180252	9152848
Inversion	Chr11	10144797	10149379
Inversion	Chr11	14773520	15540427
Inversion	Chr11	15433845	15540459	OsKitaake11g124550

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes