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Mutant Information

Mutant Name	FN1049-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1049-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 30

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 13330010 A-T Hetero INTERGENIC
SBS Chr1 13330011 A-T Hetero INTERGENIC
SBS Chr1 14927278 C-G Hetero INTERGENIC
SBS Chr1 16988898 G-T Hetero INTERGENIC
SBS Chr1 20209816 A-C Hetero INTERGENIC
SBS Chr2 11887866 G-A Homo INTERGENIC
SBS Chr2 28548066 C-T Hetero INTERGENIC
SBS Chr4 1381160 G-T Homo INTERGENIC
SBS Chr4 14175466 A-G Homo INTRON
SBS Chr5 6484976 C-T Hetero INTERGENIC
SBS Chr5 7718128 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake05g077000
SBS Chr5 13538696 T-C Hetero INTERGENIC
SBS Chr5 20177146 G-A Hetero INTERGENIC
SBS Chr6 1434031 G-A Homo NON_SYNONYMOUS_CODING OsKitaake06g016400
SBS Chr6 1434032 G-T Homo NON_SYNONYMOUS_CODING OsKitaake06g016400
SBS Chr6 16971594 A-G Hetero INTERGENIC
SBS Chr8 3488504 G-T Homo INTERGENIC
SBS Chr8 12524225 C-T Homo INTERGENIC
SBS Chr8 22089336 C-T Homo INTERGENIC
SBS Chr8 28330460 C-A Hetero INTERGENIC
SBS Chr9 3817342 C-T Hetero INTERGENIC
SBS Chr9 6206091 C-T Hetero INTERGENIC
SBS Chr9 13254989 G-A Homo INTRON
SBS Chr10 1597852 C-T Hetero UTR_5_PRIME
SBS Chr10 23096986 G-C Homo INTRON
SBS Chr11 932863 C-A Homo INTERGENIC
SBS Chr11 7803620 G-A Hetero INTERGENIC
SBS Chr11 14855869 A-T Hetero INTRON
SBS Chr11 17515519 C-T Hetero INTRON
SBS Chr12 21201562 A-C Hetero INTERGENIC

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 355774 355780 6
Deletion Chr8 692472 692482 10
Deletion Chr5 1179001 1257000 77999 6
Deletion Chr8 6244063 6244068 5
Deletion Chr9 9397098 9397102 4
Deletion Chr12 11716620 11716785 165
Deletion Chr3 15885506 15885514 8
Deletion Chr2 16967364 16967374 10
Deletion Chr5 19365879 19365880 1
Deletion Chr4 24322024 24322025 1
Deletion Chr11 26860139 26860140 1

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr6 13543372 13543376 3
Insertion Chr7 6830379 6830381 1
Insertion Chr9 3753310 3753314 3

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13330010	A-T	Hetero	INTERGENIC
SBS	Chr1	13330011	A-T	Hetero	INTERGENIC
SBS	Chr1	14927278	C-G	Hetero	INTERGENIC
SBS	Chr1	16988898	G-T	Hetero	INTERGENIC
SBS	Chr1	20209816	A-C	Hetero	INTERGENIC
SBS	Chr2	11887866	G-A	Homo	INTERGENIC
SBS	Chr2	28548066	C-T	Hetero	INTERGENIC
SBS	Chr4	1381160	G-T	Homo	INTERGENIC
SBS	Chr4	14175466	A-G	Homo	INTRON
SBS	Chr5	6484976	C-T	Hetero	INTERGENIC
SBS	Chr5	7718128	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g077000
SBS	Chr5	13538696	T-C	Hetero	INTERGENIC
SBS	Chr5	20177146	G-A	Hetero	INTERGENIC
SBS	Chr6	1434031	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g016400
SBS	Chr6	1434032	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g016400
SBS	Chr6	16971594	A-G	Hetero	INTERGENIC
SBS	Chr8	3488504	G-T	Homo	INTERGENIC
SBS	Chr8	12524225	C-T	Homo	INTERGENIC
SBS	Chr8	22089336	C-T	Homo	INTERGENIC
SBS	Chr8	28330460	C-A	Hetero	INTERGENIC
SBS	Chr9	3817342	C-T	Hetero	INTERGENIC
SBS	Chr9	6206091	C-T	Hetero	INTERGENIC
SBS	Chr9	13254989	G-A	Homo	INTRON
SBS	Chr10	1597852	C-T	Hetero	UTR_5_PRIME
SBS	Chr10	23096986	G-C	Homo	INTRON
SBS	Chr11	932863	C-A	Homo	INTERGENIC
SBS	Chr11	7803620	G-A	Hetero	INTERGENIC
SBS	Chr11	14855869	A-T	Hetero	INTRON
SBS	Chr11	17515519	C-T	Hetero	INTRON
SBS	Chr12	21201562	A-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	355774	355780	6
Deletion	Chr8	692472	692482	10
Deletion	Chr5	1179001	1257000	77999	6
Deletion	Chr8	6244063	6244068	5
Deletion	Chr9	9397098	9397102	4
Deletion	Chr12	11716620	11716785	165
Deletion	Chr3	15885506	15885514	8
Deletion	Chr2	16967364	16967374	10
Deletion	Chr5	19365879	19365880	1
Deletion	Chr4	24322024	24322025	1
Deletion	Chr11	26860139	26860140	1

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes