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Mutant Information

Mutant Name	FN1052BCF2-34 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1052BCF2-34 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 42

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 11464036 A-C Hetero INTERGENIC
SBS Chr1 15362549 G-A Hetero INTERGENIC
SBS Chr1 15362550 C-A Hetero INTERGENIC
SBS Chr1 31793664 C-T Hetero INTERGENIC
SBS Chr2 16371471 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g167900
SBS Chr2 27050621 C-A Hetero INTERGENIC
SBS Chr2 37070586 G-T Hetero INTERGENIC
SBS Chr3 989477 C-T Hetero UTR_3_PRIME
SBS Chr3 16151042 C-T Hetero INTERGENIC
SBS Chr3 19416461 C-T Hetero INTERGENIC
SBS Chr3 35721924 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g392400
SBS Chr4 16674819 C-G Hetero INTRON
SBS Chr4 17593495 C-G Hetero INTERGENIC
SBS Chr4 18854245 C-T Hetero INTERGENIC
SBS Chr4 24052190 T-A Hetero INTRON
SBS Chr4 30693293 T-C Homo INTERGENIC
SBS Chr4 32462731 G-A Homo INTERGENIC
SBS Chr4 32827051 A-G Homo INTRON
SBS Chr5 2952142 G-A Homo INTERGENIC
SBS Chr5 8059927 T-G Homo INTERGENIC
SBS Chr5 9524609 G-A Hetero INTERGENIC
SBS Chr5 12431113 A-T Homo INTERGENIC
SBS Chr5 25227634 G-A Hetero INTERGENIC
SBS Chr6 6596482 T-C Hetero INTERGENIC
SBS Chr6 12601072 G-A Hetero INTRON
SBS Chr6 28877222 G-A Homo INTERGENIC
SBS Chr7 26168084 T-A Hetero INTERGENIC
SBS Chr8 822102 G-A Hetero INTERGENIC
SBS Chr8 2475588 A-T Hetero INTERGENIC
SBS Chr8 18237614 C-T Hetero INTERGENIC
SBS Chr8 25957368 T-C Hetero INTERGENIC
SBS Chr9 1364697 T-C Hetero INTERGENIC
SBS Chr9 12190179 G-A Hetero INTERGENIC
SBS Chr10 12145126 C-T Homo INTERGENIC
SBS Chr10 15282257 G-A Hetero INTERGENIC
SBS Chr11 9696198 C-T Homo INTERGENIC
SBS Chr11 14577631 G-A Hetero INTERGENIC
SBS Chr11 15360897 C-G Homo INTERGENIC
SBS Chr11 22240071 C-T Hetero INTERGENIC
SBS Chr12 6782982 G-T Hetero INTERGENIC
SBS Chr12 14710546 C-T Hetero INTERGENIC
SBS Chr12 19513048 T-C Hetero INTERGENIC

Deletions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 9619092 9619094 2
Deletion Chr1 16543627 16543630 3
Deletion Chr1 18756060 18756068 8
Deletion Chr2 31997254 31997255 1

Insertions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 35509979 35509987 7
Insertion Chr4 35352605 35352617 11
Insertion Chr6 29867781 29867783 1
Insertion Chr7 10931073 10931077 3
Insertion Chr9 10232055 10232058 2
Insertion Chr11 4780285 4780288 2
Insertion Chr11 12105866 12105870 3
Insertion Chr11 13917320 13917323 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11464036	A-C	Hetero	INTERGENIC
SBS	Chr1	15362549	G-A	Hetero	INTERGENIC
SBS	Chr1	15362550	C-A	Hetero	INTERGENIC
SBS	Chr1	31793664	C-T	Hetero	INTERGENIC
SBS	Chr2	16371471	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g167900
SBS	Chr2	27050621	C-A	Hetero	INTERGENIC
SBS	Chr2	37070586	G-T	Hetero	INTERGENIC
SBS	Chr3	989477	C-T	Hetero	UTR_3_PRIME
SBS	Chr3	16151042	C-T	Hetero	INTERGENIC
SBS	Chr3	19416461	C-T	Hetero	INTERGENIC
SBS	Chr3	35721924	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g392400
SBS	Chr4	16674819	C-G	Hetero	INTRON
SBS	Chr4	17593495	C-G	Hetero	INTERGENIC
SBS	Chr4	18854245	C-T	Hetero	INTERGENIC
SBS	Chr4	24052190	T-A	Hetero	INTRON
SBS	Chr4	30693293	T-C	Homo	INTERGENIC
SBS	Chr4	32462731	G-A	Homo	INTERGENIC
SBS	Chr4	32827051	A-G	Homo	INTRON
SBS	Chr5	2952142	G-A	Homo	INTERGENIC
SBS	Chr5	8059927	T-G	Homo	INTERGENIC
SBS	Chr5	9524609	G-A	Hetero	INTERGENIC
SBS	Chr5	12431113	A-T	Homo	INTERGENIC
SBS	Chr5	25227634	G-A	Hetero	INTERGENIC
SBS	Chr6	6596482	T-C	Hetero	INTERGENIC
SBS	Chr6	12601072	G-A	Hetero	INTRON
SBS	Chr6	28877222	G-A	Homo	INTERGENIC
SBS	Chr7	26168084	T-A	Hetero	INTERGENIC
SBS	Chr8	822102	G-A	Hetero	INTERGENIC
SBS	Chr8	2475588	A-T	Hetero	INTERGENIC
SBS	Chr8	18237614	C-T	Hetero	INTERGENIC
SBS	Chr8	25957368	T-C	Hetero	INTERGENIC
SBS	Chr9	1364697	T-C	Hetero	INTERGENIC
SBS	Chr9	12190179	G-A	Hetero	INTERGENIC
SBS	Chr10	12145126	C-T	Homo	INTERGENIC
SBS	Chr10	15282257	G-A	Hetero	INTERGENIC
SBS	Chr11	9696198	C-T	Homo	INTERGENIC
SBS	Chr11	14577631	G-A	Hetero	INTERGENIC
SBS	Chr11	15360897	C-G	Homo	INTERGENIC
SBS	Chr11	22240071	C-T	Hetero	INTERGENIC
SBS	Chr12	6782982	G-T	Hetero	INTERGENIC
SBS	Chr12	14710546	C-T	Hetero	INTERGENIC
SBS	Chr12	19513048	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	9619092	9619094	2
Deletion	Chr1	16543627	16543630	3
Deletion	Chr1	18756060	18756068	8
Deletion	Chr2	31997254	31997255	1

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes