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Mutant Information

Mutant Name	FN1053-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1053-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 42

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1145565 G-A Hetero INTERGENIC
SBS Chr1 4899589 T-C Hetero INTERGENIC
SBS Chr1 8123055 G-A Homo INTERGENIC
SBS Chr1 12892662 A-G Hetero INTERGENIC
SBS Chr1 20479561 A-G Hetero INTERGENIC
SBS Chr1 28336763 C-T Hetero INTERGENIC
SBS Chr2 495941 C-T Hetero UTR_5_PRIME
SBS Chr2 4033708 T-A Hetero INTERGENIC
SBS Chr2 7615063 G-T Hetero INTERGENIC
SBS Chr2 17250726 G-A Hetero INTERGENIC
SBS Chr3 11267573 A-T Hetero INTERGENIC
SBS Chr3 11267579 A-G Hetero INTERGENIC
SBS Chr3 13661020 C-T Hetero INTERGENIC
SBS Chr3 15925224 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake03g203866
SBS Chr4 11926184 G-A Hetero INTERGENIC
SBS Chr4 14192351 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake04g068000
SBS Chr4 18656724 G-A Homo INTERGENIC
SBS Chr4 32833915 G-A Hetero INTRON
SBS Chr5 2780305 A-G Hetero INTERGENIC
SBS Chr5 5300993 C-T Homo INTERGENIC
SBS Chr5 10728610 C-T Hetero SYNONYMOUS_CODING
SBS Chr5 23229031 G-T Hetero INTRON
SBS Chr5 26994716 C-T Hetero SYNONYMOUS_CODING
SBS Chr6 13294820 A-T Homo INTRON
SBS Chr6 28153298 G-C Homo INTERGENIC
SBS Chr7 69368 C-A Hetero INTERGENIC
SBS Chr7 27645830 G-T Hetero UTR_3_PRIME
SBS Chr8 5031430 T-C Hetero INTRON
SBS Chr8 17281533 A-T Homo INTERGENIC
SBS Chr9 1319444 G-C Hetero INTERGENIC
SBS Chr9 11259820 C-A Hetero INTRON
SBS Chr9 12689731 A-C Hetero INTERGENIC
SBS Chr9 21975565 T-A Hetero INTRON
SBS Chr10 839062 A-T Homo INTERGENIC
SBS Chr10 4327568 C-A Homo INTERGENIC
SBS Chr10 9930761 T-C Homo INTERGENIC
SBS Chr10 11889006 T-C Homo INTERGENIC
SBS Chr11 10057359 G-C Hetero INTERGENIC
SBS Chr11 11238938 G-A Hetero INTERGENIC
SBS Chr11 18486504 G-A Homo INTERGENIC
SBS Chr11 28967770 G-A Hetero INTERGENIC
SBS Chr12 3389663 A-T Hetero INTRON

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 624737 624739 2
Deletion Chr4 7652001 8681000 1028999 53
Deletion Chr12 8343728 8343730 2
Deletion Chr3 11643586 11643592 6
Deletion Chr10 14011963 14011967 4
Deletion Chr12 17152680 17152682 2
Deletion Chr12 18053849 18053855 6
Deletion Chr6 24879839 24879840 1
Deletion Chr8 26034536 26034551 15
Deletion Chr4 27547578 27547579 1
Deletion Chr1 42991001 43011000 19999 3

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 15986072 15986075 2
Insertion Chr6 15278899 15278902 2
Insertion Chr6 19139287 19139290 2
Insertion Chr7 5959515 5959518 2
Insertion Chr11 23695605 23695608 2
Insertion Chr12 17238951 17238954 2
Insertion Chr8 13240636 13240647 10

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 7944398 7994605
Inversion Chr2 7944430 7994611

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 8516765 Chr3 11338929 OsKitaake03g155300
Translocation Chr9 8519266 Chr3 11338915 OsKitaake03g155300
Translocation Chr11 13931058 Chr10 8624052

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1145565	G-A	Hetero	INTERGENIC
SBS	Chr1	4899589	T-C	Hetero	INTERGENIC
SBS	Chr1	8123055	G-A	Homo	INTERGENIC
SBS	Chr1	12892662	A-G	Hetero	INTERGENIC
SBS	Chr1	20479561	A-G	Hetero	INTERGENIC
SBS	Chr1	28336763	C-T	Hetero	INTERGENIC
SBS	Chr2	495941	C-T	Hetero	UTR_5_PRIME
SBS	Chr2	4033708	T-A	Hetero	INTERGENIC
SBS	Chr2	7615063	G-T	Hetero	INTERGENIC
SBS	Chr2	17250726	G-A	Hetero	INTERGENIC
SBS	Chr3	11267573	A-T	Hetero	INTERGENIC
SBS	Chr3	11267579	A-G	Hetero	INTERGENIC
SBS	Chr3	13661020	C-T	Hetero	INTERGENIC
SBS	Chr3	15925224	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g203866
SBS	Chr4	11926184	G-A	Hetero	INTERGENIC
SBS	Chr4	14192351	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g068000
SBS	Chr4	18656724	G-A	Homo	INTERGENIC
SBS	Chr4	32833915	G-A	Hetero	INTRON
SBS	Chr5	2780305	A-G	Hetero	INTERGENIC
SBS	Chr5	5300993	C-T	Homo	INTERGENIC
SBS	Chr5	10728610	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr5	23229031	G-T	Hetero	INTRON
SBS	Chr5	26994716	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr6	13294820	A-T	Homo	INTRON
SBS	Chr6	28153298	G-C	Homo	INTERGENIC
SBS	Chr7	69368	C-A	Hetero	INTERGENIC
SBS	Chr7	27645830	G-T	Hetero	UTR_3_PRIME
SBS	Chr8	5031430	T-C	Hetero	INTRON
SBS	Chr8	17281533	A-T	Homo	INTERGENIC
SBS	Chr9	1319444	G-C	Hetero	INTERGENIC
SBS	Chr9	11259820	C-A	Hetero	INTRON
SBS	Chr9	12689731	A-C	Hetero	INTERGENIC
SBS	Chr9	21975565	T-A	Hetero	INTRON
SBS	Chr10	839062	A-T	Homo	INTERGENIC
SBS	Chr10	4327568	C-A	Homo	INTERGENIC
SBS	Chr10	9930761	T-C	Homo	INTERGENIC
SBS	Chr10	11889006	T-C	Homo	INTERGENIC
SBS	Chr11	10057359	G-C	Hetero	INTERGENIC
SBS	Chr11	11238938	G-A	Hetero	INTERGENIC
SBS	Chr11	18486504	G-A	Homo	INTERGENIC
SBS	Chr11	28967770	G-A	Hetero	INTERGENIC
SBS	Chr12	3389663	A-T	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	624737	624739	2
Deletion	Chr4	7652001	8681000	1028999	53
Deletion	Chr12	8343728	8343730	2
Deletion	Chr3	11643586	11643592	6
Deletion	Chr10	14011963	14011967	4
Deletion	Chr12	17152680	17152682	2
Deletion	Chr12	18053849	18053855	6
Deletion	Chr6	24879839	24879840	1
Deletion	Chr8	26034536	26034551	15
Deletion	Chr4	27547578	27547579	1
Deletion	Chr1	42991001	43011000	19999	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	7944398	7994605
Inversion	Chr2	7944430	7994611

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes