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Mutant Information

Mutant Name	FN1056-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1056-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 28

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr2 2104768 G-T Homo INTERGENIC
SBS Chr2 6600986 C-G Hetero INTERGENIC
SBS Chr2 15187992 T-A Hetero INTERGENIC
SBS Chr2 29997898 A-T Hetero INTERGENIC
SBS Chr2 35979937 G-A Homo SYNONYMOUS_CODING
SBS Chr3 26675093 G-A Hetero INTERGENIC
SBS Chr3 26941973 C-T Homo INTERGENIC
SBS Chr4 1462766 G-A Hetero INTERGENIC
SBS Chr4 21628814 C-T Homo INTERGENIC
SBS Chr6 1959829 G-A Homo INTERGENIC
SBS Chr6 16702927 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake06g157703
SBS Chr6 30984385 G-A Hetero INTRON
SBS Chr7 11065943 G-A Homo INTERGENIC
SBS Chr7 11095004 C-A Homo INTRON
SBS Chr7 29091881 T-A Hetero INTRON
SBS Chr7 29091882 G-A Hetero INTRON
SBS Chr8 1813664 T-C Hetero SPLICE_SITE_REGION
SBS Chr8 7182222 C-T Hetero INTERGENIC
SBS Chr8 7453233 C-G Hetero INTERGENIC
SBS Chr8 13689016 G-A Hetero INTERGENIC
SBS Chr8 19398632 C-T Homo INTERGENIC
SBS Chr10 8847410 G-T Hetero INTERGENIC
SBS Chr10 9100375 C-T Homo INTERGENIC
SBS Chr11 11241031 C-A Hetero INTERGENIC
SBS Chr11 19106584 C-T Hetero INTERGENIC
SBS Chr11 24799835 G-C Hetero INTERGENIC
SBS Chr11 27518204 G-A Hetero UTR_5_PRIME
SBS Chr12 13112997 C-T Hetero INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 86160 86161 1
Deletion Chr7 3634872 3634873 1
Deletion Chr7 6840693 6840694 1
Deletion Chr4 9744805 9744808 3
Deletion Chr7 13718001 13730000 11999
Deletion Chr2 14271677 14271685 8
Deletion Chr1 17988658 17988843 185 OsKitaake01g182400
Deletion Chr2 20336749 20336757 8
Deletion Chr4 21656141 21656153 12
Deletion Chr3 22588597 22588614 17
Deletion Chr7 22639378 22639385 7
Deletion Chr10 22798611 22798613 2
Deletion Chr6 24982001 25093000 110999 5
Deletion Chr12 25338660 25338661 1
Deletion Chr7 25662235 25662258 23

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 6938364 6938368 3
Insertion Chr5 12707812 12707815 2
Insertion Chr5 26328017 26328020 2
Insertion Chr6 16470457 16470460 2
Insertion Chr11 19899294 19899297 2
Insertion Chr11 26856430 26856433 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 35419943 35735988
Inversion Chr2 35419949 35738505 OsKitaake02g376100

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	2104768	G-T	Homo	INTERGENIC
SBS	Chr2	6600986	C-G	Hetero	INTERGENIC
SBS	Chr2	15187992	T-A	Hetero	INTERGENIC
SBS	Chr2	29997898	A-T	Hetero	INTERGENIC
SBS	Chr2	35979937	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr3	26675093	G-A	Hetero	INTERGENIC
SBS	Chr3	26941973	C-T	Homo	INTERGENIC
SBS	Chr4	1462766	G-A	Hetero	INTERGENIC
SBS	Chr4	21628814	C-T	Homo	INTERGENIC
SBS	Chr6	1959829	G-A	Homo	INTERGENIC
SBS	Chr6	16702927	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g157703
SBS	Chr6	30984385	G-A	Hetero	INTRON
SBS	Chr7	11065943	G-A	Homo	INTERGENIC
SBS	Chr7	11095004	C-A	Homo	INTRON
SBS	Chr7	29091881	T-A	Hetero	INTRON
SBS	Chr7	29091882	G-A	Hetero	INTRON
SBS	Chr8	1813664	T-C	Hetero	SPLICE_SITE_REGION
SBS	Chr8	7182222	C-T	Hetero	INTERGENIC
SBS	Chr8	7453233	C-G	Hetero	INTERGENIC
SBS	Chr8	13689016	G-A	Hetero	INTERGENIC
SBS	Chr8	19398632	C-T	Homo	INTERGENIC
SBS	Chr10	8847410	G-T	Hetero	INTERGENIC
SBS	Chr10	9100375	C-T	Homo	INTERGENIC
SBS	Chr11	11241031	C-A	Hetero	INTERGENIC
SBS	Chr11	19106584	C-T	Hetero	INTERGENIC
SBS	Chr11	24799835	G-C	Hetero	INTERGENIC
SBS	Chr11	27518204	G-A	Hetero	UTR_5_PRIME
SBS	Chr12	13112997	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	86160	86161	1
Deletion	Chr7	3634872	3634873	1
Deletion	Chr7	6840693	6840694	1
Deletion	Chr4	9744805	9744808	3
Deletion	Chr7	13718001	13730000	11999
Deletion	Chr2	14271677	14271685	8
Deletion	Chr1	17988658	17988843	185	OsKitaake01g182400
Deletion	Chr2	20336749	20336757	8
Deletion	Chr4	21656141	21656153	12
Deletion	Chr3	22588597	22588614	17
Deletion	Chr7	22639378	22639385	7
Deletion	Chr10	22798611	22798613	2
Deletion	Chr6	24982001	25093000	110999	5
Deletion	Chr12	25338660	25338661	1
Deletion	Chr7	25662235	25662258	23

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	35419943	35735988
Inversion	Chr2	35419949	35738505	OsKitaake02g376100

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes