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Mutant Information

Mutant Name	FN1057-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1057-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 46

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 9759364 G-A Hetero INTERGENIC
SBS Chr1 15787323 A-G Hetero INTRON
SBS Chr1 21809235 C-T Hetero INTERGENIC
SBS Chr2 6191944 T-A Hetero INTERGENIC
SBS Chr2 18895249 C-G Hetero INTERGENIC
SBS Chr2 22668883 T-C Hetero SYNONYMOUS_CODING
SBS Chr2 25223326 G-A Hetero INTERGENIC
SBS Chr2 32927229 G-T Hetero INTRON
SBS Chr2 32927232 T-G Hetero INTRON
SBS Chr2 35450645 G-A Hetero INTERGENIC
SBS Chr3 3129011 T-A Homo INTERGENIC
SBS Chr3 12287698 C-T Homo INTERGENIC
SBS Chr3 16642883 G-A Homo INTERGENIC
SBS Chr3 29774838 T-C Hetero INTERGENIC
SBS Chr3 31865818 T-C Hetero INTERGENIC
SBS Chr3 33907942 C-T Hetero INTRON
SBS Chr4 4772451 G-T Homo INTERGENIC
SBS Chr4 27498979 T-C Hetero INTERGENIC
SBS Chr5 14973376 A-G Hetero INTERGENIC
SBS Chr5 18036057 A-G Homo INTERGENIC
SBS Chr5 21802766 C-T Hetero INTRON
SBS Chr6 818576 C-T Hetero INTERGENIC
SBS Chr6 3336951 A-T Hetero INTERGENIC
SBS Chr6 4336943 G-A Hetero INTERGENIC
SBS Chr6 7841964 T-C Hetero INTERGENIC
SBS Chr6 20232300 C-T Hetero INTERGENIC
SBS Chr6 21233265 G-T Hetero INTRON
SBS Chr6 26295311 G-T Hetero INTERGENIC
SBS Chr6 26814171 C-T Hetero INTERGENIC
SBS Chr6 28654557 A-G Hetero INTERGENIC
SBS Chr7 7640714 G-A Hetero INTERGENIC
SBS Chr7 27045077 C-G Hetero SYNONYMOUS_CODING
SBS Chr8 20355266 A-G Homo INTERGENIC
SBS Chr8 21929162 C-T Hetero INTERGENIC
SBS Chr8 23584350 G-T Hetero INTRON
SBS Chr9 6890785 T-C Hetero INTERGENIC
SBS Chr9 9013531 T-A Hetero INTERGENIC
SBS Chr9 11477123 A-G Hetero INTERGENIC
SBS Chr9 15375077 G-A Hetero INTERGENIC
SBS Chr9 21051119 A-G Hetero INTERGENIC
SBS Chr10 17987011 A-G Hetero INTERGENIC
SBS Chr10 22478545 G-C Hetero INTERGENIC
SBS Chr11 3424808 T-C Homo INTERGENIC
SBS Chr11 20079063 G-T Homo INTERGENIC
SBS Chr11 26755007 C-T Hetero INTERGENIC
SBS Chr11 26755008 G-A Hetero INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 1024001 1047000 22999 2
Deletion Chr8 1573129 1573135 6
Deletion Chr4 2717817 2717819 2
Deletion Chr12 2855750 2855765 15
Deletion Chr10 5316001 5379000 62999 3
Deletion Chr4 9480408 9480580 172
Deletion Chr3 12280690 12280696 6
Deletion Chr3 16739732 16739904 172
Deletion Chr4 17767337 17767450 113
Deletion Chr5 22200846 22200848 2
Deletion Chr3 25246001 25267000 20999 2
Deletion Chr4 30907370 30907376 6
Deletion Chr1 31155236 31155238 2
Deletion Chr1 39301959 39301971 12

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 17628566 17628569 2
Insertion Chr4 15074681 15074684 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 337015 484326 OsKitaake11g002900
Inversion Chr11 337028 484339 OsKitaake11g002900
Inversion Chr9 15371690 15376821
Inversion Chr9 15371716 15454515 OsKitaake09g108500

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 12358088 Chr6 28944984 OsKitaake10g074200

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9759364	G-A	Hetero	INTERGENIC
SBS	Chr1	15787323	A-G	Hetero	INTRON
SBS	Chr1	21809235	C-T	Hetero	INTERGENIC
SBS	Chr2	6191944	T-A	Hetero	INTERGENIC
SBS	Chr2	18895249	C-G	Hetero	INTERGENIC
SBS	Chr2	22668883	T-C	Hetero	SYNONYMOUS_CODING
SBS	Chr2	25223326	G-A	Hetero	INTERGENIC
SBS	Chr2	32927229	G-T	Hetero	INTRON
SBS	Chr2	32927232	T-G	Hetero	INTRON
SBS	Chr2	35450645	G-A	Hetero	INTERGENIC
SBS	Chr3	3129011	T-A	Homo	INTERGENIC
SBS	Chr3	12287698	C-T	Homo	INTERGENIC
SBS	Chr3	16642883	G-A	Homo	INTERGENIC
SBS	Chr3	29774838	T-C	Hetero	INTERGENIC
SBS	Chr3	31865818	T-C	Hetero	INTERGENIC
SBS	Chr3	33907942	C-T	Hetero	INTRON
SBS	Chr4	4772451	G-T	Homo	INTERGENIC
SBS	Chr4	27498979	T-C	Hetero	INTERGENIC
SBS	Chr5	14973376	A-G	Hetero	INTERGENIC
SBS	Chr5	18036057	A-G	Homo	INTERGENIC
SBS	Chr5	21802766	C-T	Hetero	INTRON
SBS	Chr6	818576	C-T	Hetero	INTERGENIC
SBS	Chr6	3336951	A-T	Hetero	INTERGENIC
SBS	Chr6	4336943	G-A	Hetero	INTERGENIC
SBS	Chr6	7841964	T-C	Hetero	INTERGENIC
SBS	Chr6	20232300	C-T	Hetero	INTERGENIC
SBS	Chr6	21233265	G-T	Hetero	INTRON
SBS	Chr6	26295311	G-T	Hetero	INTERGENIC
SBS	Chr6	26814171	C-T	Hetero	INTERGENIC
SBS	Chr6	28654557	A-G	Hetero	INTERGENIC
SBS	Chr7	7640714	G-A	Hetero	INTERGENIC
SBS	Chr7	27045077	C-G	Hetero	SYNONYMOUS_CODING
SBS	Chr8	20355266	A-G	Homo	INTERGENIC
SBS	Chr8	21929162	C-T	Hetero	INTERGENIC
SBS	Chr8	23584350	G-T	Hetero	INTRON
SBS	Chr9	6890785	T-C	Hetero	INTERGENIC
SBS	Chr9	9013531	T-A	Hetero	INTERGENIC
SBS	Chr9	11477123	A-G	Hetero	INTERGENIC
SBS	Chr9	15375077	G-A	Hetero	INTERGENIC
SBS	Chr9	21051119	A-G	Hetero	INTERGENIC
SBS	Chr10	17987011	A-G	Hetero	INTERGENIC
SBS	Chr10	22478545	G-C	Hetero	INTERGENIC
SBS	Chr11	3424808	T-C	Homo	INTERGENIC
SBS	Chr11	20079063	G-T	Homo	INTERGENIC
SBS	Chr11	26755007	C-T	Hetero	INTERGENIC
SBS	Chr11	26755008	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	1024001	1047000	22999	2
Deletion	Chr8	1573129	1573135	6
Deletion	Chr4	2717817	2717819	2
Deletion	Chr12	2855750	2855765	15
Deletion	Chr10	5316001	5379000	62999	3
Deletion	Chr4	9480408	9480580	172
Deletion	Chr3	12280690	12280696	6
Deletion	Chr3	16739732	16739904	172
Deletion	Chr4	17767337	17767450	113
Deletion	Chr5	22200846	22200848	2
Deletion	Chr3	25246001	25267000	20999	2
Deletion	Chr4	30907370	30907376	6
Deletion	Chr1	31155236	31155238	2
Deletion	Chr1	39301959	39301971	12

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	337015	484326	OsKitaake11g002900
Inversion	Chr11	337028	484339	OsKitaake11g002900
Inversion	Chr9	15371690	15376821
Inversion	Chr9	15371716	15454515	OsKitaake09g108500

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes