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Mutant Information

Mutant Name	FN1058-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1058-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 47

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2537961 A-G Homo INTERGENIC
SBS Chr1 23557121 A-T Hetero INTERGENIC
SBS Chr1 27140369 G-T Homo INTERGENIC
SBS Chr1 40100798 C-T Homo INTERGENIC
SBS Chr2 11819865 C-A Hetero INTRON
SBS Chr2 15940396 C-T Hetero INTERGENIC
SBS Chr2 26816050 C-T Hetero INTERGENIC
SBS Chr2 32655821 G-A Hetero INTERGENIC
SBS Chr2 36609324 A-G Hetero INTERGENIC
SBS Chr3 7076730 G-A Hetero INTERGENIC
SBS Chr4 19388 T-A Hetero INTERGENIC
SBS Chr4 17038168 C-T Hetero INTERGENIC
SBS Chr4 20559918 C-A Hetero INTERGENIC
SBS Chr4 21843124 A-G Homo NON_SYNONYMOUS_CODING OsKitaake04g125400
SBS Chr4 24063889 T-A Homo INTERGENIC
SBS Chr4 32072065 G-A Homo INTERGENIC
SBS Chr5 415029 C-T Hetero INTERGENIC
SBS Chr5 4248462 G-C Hetero INTERGENIC
SBS Chr5 17917287 C-T Hetero INTRON
SBS Chr6 17779309 G-A Homo INTERGENIC
SBS Chr6 21708268 T-C Hetero INTERGENIC
SBS Chr7 4905030 T-A Hetero INTERGENIC
SBS Chr7 5166338 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake07g063000
SBS Chr7 8048085 C-T Hetero INTERGENIC
SBS Chr7 18812553 C-T Homo INTERGENIC
SBS Chr8 479255 G-T Hetero INTRON
SBS Chr8 3301136 T-A Homo INTERGENIC
SBS Chr8 9309621 G-A Homo INTRON
SBS Chr8 9309622 C-A Homo INTRON
SBS Chr8 10233664 T-G Hetero INTERGENIC
SBS Chr8 18139681 A-T Hetero INTERGENIC
SBS Chr8 28627825 C-T Homo INTERGENIC
SBS Chr9 2193405 T-C Homo INTERGENIC
SBS Chr9 3041427 G-A Homo INTERGENIC
SBS Chr9 20867054 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake09g178250
SBS Chr9 20951967 G-C Hetero INTERGENIC
SBS Chr10 4736143 G-A Homo INTERGENIC
SBS Chr10 20629772 G-A Hetero INTERGENIC
SBS Chr11 1108594 G-A Hetero INTERGENIC
SBS Chr11 15334377 C-T Homo INTERGENIC
SBS Chr11 22801379 G-A Hetero INTERGENIC
SBS Chr11 26460518 G-A Homo INTERGENIC
SBS Chr12 13375577 C-T Hetero INTERGENIC
SBS Chr12 19523512 C-A Hetero INTERGENIC
SBS Chr12 20858408 G-A Hetero INTERGENIC
SBS Chr12 23060926 G-A Hetero INTERGENIC
SBS Chr12 25556314 C-T Hetero INTRON

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 757417 757429 12
Deletion Chr11 7285408 7285409 1
Deletion Chr4 8345709 8345776 67
Deletion Chr1 12192424 12192436 12
Deletion Chr2 13955843 13955847 4
Deletion Chr12 18339424 18339534 110
Deletion Chr10 20248201 20248203 2
Deletion Chr11 21704766 21704769 3
Deletion Chr4 24557604 24557611 7
Deletion Chr1 26556574 26556576 2
Deletion Chr1 26589273 26589279 6
Deletion Chr5 28971583 28971587 4

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 22525662 22525667 4

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 13582642 Chr4 9661046

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2537961	A-G	Homo	INTERGENIC
SBS	Chr1	23557121	A-T	Hetero	INTERGENIC
SBS	Chr1	27140369	G-T	Homo	INTERGENIC
SBS	Chr1	40100798	C-T	Homo	INTERGENIC
SBS	Chr2	11819865	C-A	Hetero	INTRON
SBS	Chr2	15940396	C-T	Hetero	INTERGENIC
SBS	Chr2	26816050	C-T	Hetero	INTERGENIC
SBS	Chr2	32655821	G-A	Hetero	INTERGENIC
SBS	Chr2	36609324	A-G	Hetero	INTERGENIC
SBS	Chr3	7076730	G-A	Hetero	INTERGENIC
SBS	Chr4	19388	T-A	Hetero	INTERGENIC
SBS	Chr4	17038168	C-T	Hetero	INTERGENIC
SBS	Chr4	20559918	C-A	Hetero	INTERGENIC
SBS	Chr4	21843124	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g125400
SBS	Chr4	24063889	T-A	Homo	INTERGENIC
SBS	Chr4	32072065	G-A	Homo	INTERGENIC
SBS	Chr5	415029	C-T	Hetero	INTERGENIC
SBS	Chr5	4248462	G-C	Hetero	INTERGENIC
SBS	Chr5	17917287	C-T	Hetero	INTRON
SBS	Chr6	17779309	G-A	Homo	INTERGENIC
SBS	Chr6	21708268	T-C	Hetero	INTERGENIC
SBS	Chr7	4905030	T-A	Hetero	INTERGENIC
SBS	Chr7	5166338	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g063000
SBS	Chr7	8048085	C-T	Hetero	INTERGENIC
SBS	Chr7	18812553	C-T	Homo	INTERGENIC
SBS	Chr8	479255	G-T	Hetero	INTRON
SBS	Chr8	3301136	T-A	Homo	INTERGENIC
SBS	Chr8	9309621	G-A	Homo	INTRON
SBS	Chr8	9309622	C-A	Homo	INTRON
SBS	Chr8	10233664	T-G	Hetero	INTERGENIC
SBS	Chr8	18139681	A-T	Hetero	INTERGENIC
SBS	Chr8	28627825	C-T	Homo	INTERGENIC
SBS	Chr9	2193405	T-C	Homo	INTERGENIC
SBS	Chr9	3041427	G-A	Homo	INTERGENIC
SBS	Chr9	20867054	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g178250
SBS	Chr9	20951967	G-C	Hetero	INTERGENIC
SBS	Chr10	4736143	G-A	Homo	INTERGENIC
SBS	Chr10	20629772	G-A	Hetero	INTERGENIC
SBS	Chr11	1108594	G-A	Hetero	INTERGENIC
SBS	Chr11	15334377	C-T	Homo	INTERGENIC
SBS	Chr11	22801379	G-A	Hetero	INTERGENIC
SBS	Chr11	26460518	G-A	Homo	INTERGENIC
SBS	Chr12	13375577	C-T	Hetero	INTERGENIC
SBS	Chr12	19523512	C-A	Hetero	INTERGENIC
SBS	Chr12	20858408	G-A	Hetero	INTERGENIC
SBS	Chr12	23060926	G-A	Hetero	INTERGENIC
SBS	Chr12	25556314	C-T	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	757417	757429	12
Deletion	Chr11	7285408	7285409	1
Deletion	Chr4	8345709	8345776	67
Deletion	Chr1	12192424	12192436	12
Deletion	Chr2	13955843	13955847	4
Deletion	Chr12	18339424	18339534	110
Deletion	Chr10	20248201	20248203	2
Deletion	Chr11	21704766	21704769	3
Deletion	Chr4	24557604	24557611	7
Deletion	Chr1	26556574	26556576	2
Deletion	Chr1	26589273	26589279	6
Deletion	Chr5	28971583	28971587	4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	13582642	Chr4	9661046

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes