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Mutant Information

Mutant Name	FN1061-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1061-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 38

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 11558857 G-A Hetero INTERGENIC
SBS Chr1 18037547 A-T Hetero INTERGENIC
SBS Chr1 30780301 A-G Hetero INTERGENIC
SBS Chr1 34892765 C-T Hetero INTERGENIC
SBS Chr2 11887866 G-A Homo INTERGENIC
SBS Chr2 13357911 G-A Hetero INTERGENIC
SBS Chr2 14882443 T-C Hetero INTERGENIC
SBS Chr2 17121893 T-C Hetero INTERGENIC
SBS Chr2 22985826 C-T Hetero INTERGENIC
SBS Chr2 23032460 G-A Hetero INTERGENIC
SBS Chr2 23724224 C-T Homo INTRON
SBS Chr3 4478776 A-T Homo INTERGENIC
SBS Chr4 3538352 A-C Homo INTERGENIC
SBS Chr4 33741206 G-T Hetero INTERGENIC
SBS Chr5 7557384 T-A Hetero INTERGENIC
SBS Chr5 10784191 A-T Hetero UTR_3_PRIME
SBS Chr5 12154487 C-A Hetero INTERGENIC
SBS Chr5 12942902 G-T Hetero INTERGENIC
SBS Chr5 21777292 G-A Homo INTERGENIC
SBS Chr6 11109576 G-A Hetero INTERGENIC
SBS Chr6 12702207 T-C Homo INTERGENIC
SBS Chr6 17862917 G-T Homo INTERGENIC
SBS Chr7 7231208 C-T Hetero INTERGENIC
SBS Chr7 17151347 C-A Homo INTERGENIC
SBS Chr7 28094907 T-C Homo INTERGENIC
SBS Chr8 2358242 G-A Hetero INTERGENIC
SBS Chr8 4286343 G-A Hetero INTERGENIC
SBS Chr8 12076171 G-A Hetero INTERGENIC
SBS Chr9 1092562 T-A Homo INTERGENIC
SBS Chr9 6837888 A-G Homo INTERGENIC
SBS Chr10 6748435 C-A Hetero INTERGENIC
SBS Chr10 8715472 A-T Hetero INTERGENIC
SBS Chr11 3438518 C-T Hetero INTERGENIC
SBS Chr11 11988189 G-C Hetero UTR_3_PRIME
SBS Chr11 20440750 A-T Hetero INTERGENIC
SBS Chr11 20440757 C-T Hetero UTR_3_PRIME
SBS Chr11 22886369 G-A Hetero INTERGENIC
SBS Chr12 18634897 G-A Homo INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 3449866 3449868 2
Deletion Chr3 3635584 3635586 2
Deletion Chr10 6815001 6831000 15999
Deletion Chr7 10929067 10929070 3
Deletion Chr5 11937207 11937210 3
Deletion Chr9 14711490 14711492 2
Deletion Chr1 14900126 14900132 6 OsKitaake01g142100
Deletion Chr3 16686788 16686789 1
Deletion Chr12 20136913 20136914 1
Deletion Chr3 20735793 20735802 9
Deletion Chr12 26316697 26316708 11
Deletion Chr6 26948364 26948365 1
Deletion Chr6 30933065 30933066 1
Deletion Chr2 31182245 31182254 9
Deletion Chr3 31676181 31676186 5
Deletion Chr2 35930576 35930579 3

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 4913987 4913991 3
Insertion Chr8 24269047 24269050 2
Insertion Chr11 1397330 1397333 2
Insertion Chr1 38196203 38196210 6 OsKitaake01g407400
Insertion Chr5 30232136 30232144 7
Insertion Chr8 6843614 6843617 2
Insertion Chr9 4260263 4260267 3

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 2373124 2949346 OsKitaake08g032400
Inversion Chr3 35831656 36018520 OsKitaake03g394550
Inversion Chr3 35831658 36018519 OsKitaake03g394550

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 15648368 Chr2 35718565
Translocation Chr10 15648437 Chr2 35718564
Translocation Chr10 16181768 Chr3 9810664 2
Translocation Chr10 16234496 Chr3 9808542 2
Translocation Chr12 26904851 Chr8 3944993 OsKitaake12g225000

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11558857	G-A	Hetero	INTERGENIC
SBS	Chr1	18037547	A-T	Hetero	INTERGENIC
SBS	Chr1	30780301	A-G	Hetero	INTERGENIC
SBS	Chr1	34892765	C-T	Hetero	INTERGENIC
SBS	Chr2	11887866	G-A	Homo	INTERGENIC
SBS	Chr2	13357911	G-A	Hetero	INTERGENIC
SBS	Chr2	14882443	T-C	Hetero	INTERGENIC
SBS	Chr2	17121893	T-C	Hetero	INTERGENIC
SBS	Chr2	22985826	C-T	Hetero	INTERGENIC
SBS	Chr2	23032460	G-A	Hetero	INTERGENIC
SBS	Chr2	23724224	C-T	Homo	INTRON
SBS	Chr3	4478776	A-T	Homo	INTERGENIC
SBS	Chr4	3538352	A-C	Homo	INTERGENIC
SBS	Chr4	33741206	G-T	Hetero	INTERGENIC
SBS	Chr5	7557384	T-A	Hetero	INTERGENIC
SBS	Chr5	10784191	A-T	Hetero	UTR_3_PRIME
SBS	Chr5	12154487	C-A	Hetero	INTERGENIC
SBS	Chr5	12942902	G-T	Hetero	INTERGENIC
SBS	Chr5	21777292	G-A	Homo	INTERGENIC
SBS	Chr6	11109576	G-A	Hetero	INTERGENIC
SBS	Chr6	12702207	T-C	Homo	INTERGENIC
SBS	Chr6	17862917	G-T	Homo	INTERGENIC
SBS	Chr7	7231208	C-T	Hetero	INTERGENIC
SBS	Chr7	17151347	C-A	Homo	INTERGENIC
SBS	Chr7	28094907	T-C	Homo	INTERGENIC
SBS	Chr8	2358242	G-A	Hetero	INTERGENIC
SBS	Chr8	4286343	G-A	Hetero	INTERGENIC
SBS	Chr8	12076171	G-A	Hetero	INTERGENIC
SBS	Chr9	1092562	T-A	Homo	INTERGENIC
SBS	Chr9	6837888	A-G	Homo	INTERGENIC
SBS	Chr10	6748435	C-A	Hetero	INTERGENIC
SBS	Chr10	8715472	A-T	Hetero	INTERGENIC
SBS	Chr11	3438518	C-T	Hetero	INTERGENIC
SBS	Chr11	11988189	G-C	Hetero	UTR_3_PRIME
SBS	Chr11	20440750	A-T	Hetero	INTERGENIC
SBS	Chr11	20440757	C-T	Hetero	UTR_3_PRIME
SBS	Chr11	22886369	G-A	Hetero	INTERGENIC
SBS	Chr12	18634897	G-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	3449866	3449868	2
Deletion	Chr3	3635584	3635586	2
Deletion	Chr10	6815001	6831000	15999
Deletion	Chr7	10929067	10929070	3
Deletion	Chr5	11937207	11937210	3
Deletion	Chr9	14711490	14711492	2
Deletion	Chr1	14900126	14900132	6	OsKitaake01g142100
Deletion	Chr3	16686788	16686789	1
Deletion	Chr12	20136913	20136914	1
Deletion	Chr3	20735793	20735802	9
Deletion	Chr12	26316697	26316708	11
Deletion	Chr6	26948364	26948365	1
Deletion	Chr6	30933065	30933066	1
Deletion	Chr2	31182245	31182254	9
Deletion	Chr3	31676181	31676186	5
Deletion	Chr2	35930576	35930579	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	2373124	2949346	OsKitaake08g032400
Inversion	Chr3	35831656	36018520	OsKitaake03g394550
Inversion	Chr3	35831658	36018519	OsKitaake03g394550

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes