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Mutant Information

Mutant Name	FN1062-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1062-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 45

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2311167 G-T Hetero SPLICE_SITE_REGION
SBS Chr1 14262458 C-T Hetero INTERGENIC
SBS Chr1 14412217 G-A Hetero INTERGENIC
SBS Chr1 17003625 T-G Hetero INTERGENIC
SBS Chr1 19073630 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake01g191300
SBS Chr1 21686708 T-C Hetero INTERGENIC
SBS Chr1 24909569 C-T Hetero INTERGENIC
SBS Chr1 40536193 G-A Homo INTRON
SBS Chr2 364035 A-G Hetero INTERGENIC
SBS Chr2 20586743 T-A Hetero INTERGENIC
SBS Chr2 34995406 T-C Homo INTERGENIC
SBS Chr3 6444067 C-T Hetero INTERGENIC
SBS Chr3 16744312 C-T Hetero INTERGENIC
SBS Chr3 18282676 C-T Hetero INTERGENIC
SBS Chr3 20000877 G-A Hetero INTERGENIC
SBS Chr3 26159460 C-A Hetero INTERGENIC
SBS Chr3 36726277 T-G Homo INTRON
SBS Chr4 11356692 G-T Hetero INTERGENIC
SBS Chr4 36890431 G-A Hetero INTERGENIC
SBS Chr5 18027586 C-T Hetero INTERGENIC
SBS Chr5 23222152 T-G Hetero UTR_5_PRIME
SBS Chr5 27046976 T-A Hetero INTERGENIC
SBS Chr5 27046977 G-A Hetero INTERGENIC
SBS Chr6 7418410 G-A Hetero INTERGENIC
SBS Chr6 7764849 G-T Hetero INTERGENIC
SBS Chr6 12859147 G-C Hetero UTR_3_PRIME
SBS Chr6 23473152 C-G Hetero INTERGENIC
SBS Chr7 3202435 G-T Homo INTRON
SBS Chr7 9659718 C-T Homo INTERGENIC
SBS Chr7 15792572 G-A Hetero INTERGENIC
SBS Chr7 18371348 C-T Homo INTERGENIC
SBS Chr8 15798753 G-T Hetero INTERGENIC
SBS Chr8 17539728 T-A Hetero INTERGENIC
SBS Chr9 8787212 T-C Hetero INTERGENIC
SBS Chr9 11138314 G-A Hetero INTERGENIC
SBS Chr9 18975340 G-A Hetero INTERGENIC
SBS Chr9 21226060 C-T Hetero INTERGENIC
SBS Chr10 981385 A-T Hetero INTERGENIC
SBS Chr11 19819714 C-G Hetero INTERGENIC
SBS Chr11 25449204 G-A Hetero INTERGENIC
SBS Chr12 1429530 G-A Homo INTRON
SBS Chr12 8717763 T-G Homo INTERGENIC
SBS Chr12 12292904 G-A Hetero INTERGENIC
SBS Chr12 18402597 T-A Hetero INTERGENIC
SBS Chr12 23637407 G-A Hetero SYNONYMOUS_CODING

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 1760405 1760412 7
Deletion Chr7 2139877 2139878 1
Deletion Chr7 5843303 5843307 4
Deletion Chr1 5943001 6014000 70999 8
Deletion Chr9 8386469 8386595 126
Deletion Chr10 14436897 14436914 17
Deletion Chr9 14532782 14532784 2
Deletion Chr10 15518932 15518935 3
Deletion Chr12 18800956 18800965 9
Deletion Chr11 18908179 18908181 2
Deletion Chr10 19697429 19697443 14
Deletion Chr12 24900858 24900859 1
Deletion Chr5 29020492 29020493 1 OsKitaake05g274100

Insertions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 42697074 42697077 2
Insertion Chr2 27730543 27730546 2
Insertion Chr4 29695595 29695598 2 OsKitaake04g228150
Insertion Chr5 22809292 22809296 3
Insertion Chr6 17861161 17861164 2
Insertion Chr7 12989443 12989445 1
Insertion Chr10 13525053 13525056 2
Insertion Chr5 12594783 12594785 1

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2311167	G-T	Hetero	SPLICE_SITE_REGION
SBS	Chr1	14262458	C-T	Hetero	INTERGENIC
SBS	Chr1	14412217	G-A	Hetero	INTERGENIC
SBS	Chr1	17003625	T-G	Hetero	INTERGENIC
SBS	Chr1	19073630	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g191300
SBS	Chr1	21686708	T-C	Hetero	INTERGENIC
SBS	Chr1	24909569	C-T	Hetero	INTERGENIC
SBS	Chr1	40536193	G-A	Homo	INTRON
SBS	Chr2	364035	A-G	Hetero	INTERGENIC
SBS	Chr2	20586743	T-A	Hetero	INTERGENIC
SBS	Chr2	34995406	T-C	Homo	INTERGENIC
SBS	Chr3	6444067	C-T	Hetero	INTERGENIC
SBS	Chr3	16744312	C-T	Hetero	INTERGENIC
SBS	Chr3	18282676	C-T	Hetero	INTERGENIC
SBS	Chr3	20000877	G-A	Hetero	INTERGENIC
SBS	Chr3	26159460	C-A	Hetero	INTERGENIC
SBS	Chr3	36726277	T-G	Homo	INTRON
SBS	Chr4	11356692	G-T	Hetero	INTERGENIC
SBS	Chr4	36890431	G-A	Hetero	INTERGENIC
SBS	Chr5	18027586	C-T	Hetero	INTERGENIC
SBS	Chr5	23222152	T-G	Hetero	UTR_5_PRIME
SBS	Chr5	27046976	T-A	Hetero	INTERGENIC
SBS	Chr5	27046977	G-A	Hetero	INTERGENIC
SBS	Chr6	7418410	G-A	Hetero	INTERGENIC
SBS	Chr6	7764849	G-T	Hetero	INTERGENIC
SBS	Chr6	12859147	G-C	Hetero	UTR_3_PRIME
SBS	Chr6	23473152	C-G	Hetero	INTERGENIC
SBS	Chr7	3202435	G-T	Homo	INTRON
SBS	Chr7	9659718	C-T	Homo	INTERGENIC
SBS	Chr7	15792572	G-A	Hetero	INTERGENIC
SBS	Chr7	18371348	C-T	Homo	INTERGENIC
SBS	Chr8	15798753	G-T	Hetero	INTERGENIC
SBS	Chr8	17539728	T-A	Hetero	INTERGENIC
SBS	Chr9	8787212	T-C	Hetero	INTERGENIC
SBS	Chr9	11138314	G-A	Hetero	INTERGENIC
SBS	Chr9	18975340	G-A	Hetero	INTERGENIC
SBS	Chr9	21226060	C-T	Hetero	INTERGENIC
SBS	Chr10	981385	A-T	Hetero	INTERGENIC
SBS	Chr11	19819714	C-G	Hetero	INTERGENIC
SBS	Chr11	25449204	G-A	Hetero	INTERGENIC
SBS	Chr12	1429530	G-A	Homo	INTRON
SBS	Chr12	8717763	T-G	Homo	INTERGENIC
SBS	Chr12	12292904	G-A	Hetero	INTERGENIC
SBS	Chr12	18402597	T-A	Hetero	INTERGENIC
SBS	Chr12	23637407	G-A	Hetero	SYNONYMOUS_CODING

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	1760405	1760412	7
Deletion	Chr7	2139877	2139878	1
Deletion	Chr7	5843303	5843307	4
Deletion	Chr1	5943001	6014000	70999	8
Deletion	Chr9	8386469	8386595	126
Deletion	Chr10	14436897	14436914	17
Deletion	Chr9	14532782	14532784	2
Deletion	Chr10	15518932	15518935	3
Deletion	Chr12	18800956	18800965	9
Deletion	Chr11	18908179	18908181	2
Deletion	Chr10	19697429	19697443	14
Deletion	Chr12	24900858	24900859	1
Deletion	Chr5	29020492	29020493	1	OsKitaake05g274100

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes