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| Mutant Information |
|---|
| Mutant Name | FN1064-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1064-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 43
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 3216120 | A-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 14498215 | T-C | Hetero | INTRON | |
| SBS | Chr1 | 18796566 | A-T | Homo | INTERGENIC | |
| SBS | Chr1 | 18926087 | C-T | Homo | INTERGENIC | |
| SBS | Chr1 | 22415018 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 27661378 | T-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 43671682 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 14872373 | T-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 14872375 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 21583297 | T-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 3156573 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 6516599 | T-A | Homo | INTRON | |
| SBS | Chr3 | 6516600 | C-G | Homo | INTRON | |
| SBS | Chr3 | 14845966 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 20666892 | A-T | Homo | INTERGENIC | |
| SBS | Chr3 | 26484847 | C-T | Homo | SYNONYMOUS_CODING | |
| SBS | Chr4 | 8350510 | A-G | Homo | INTERGENIC | |
| SBS | Chr4 | 9165725 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 11246838 | G-C | Homo | INTERGENIC | |
| SBS | Chr4 | 12185724 | A-G | Homo | INTERGENIC | |
| SBS | Chr4 | 26457220 | T-C | Homo | INTERGENIC | |
| SBS | Chr4 | 27317992 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 35809732 | G-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 4296066 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 24499928 | T-A | Homo | INTERGENIC | |
| SBS | Chr6 | 28072824 | G-A | Homo | INTRON | |
| SBS | Chr6 | 28921554 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 28921555 | G-A | Homo | INTERGENIC | |
| SBS | Chr7 | 2261628 | T-A | Homo | INTERGENIC | |
| SBS | Chr7 | 3948389 | T-C | Homo | INTERGENIC | |
| SBS | Chr7 | 14987979 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 27235034 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 2316900 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 13175421 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 16194910 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 16194911 | T-A | Homo | INTERGENIC | |
| SBS | Chr9 | 215825 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 890422 | G-A | Hetero | INTRON | |
| SBS | Chr9 | 8255542 | A-G | Hetero | INTERGENIC | |
| SBS | Chr9 | 8578163 | G-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 16896184 | C-T | Homo | INTERGENIC | |
| SBS | Chr10 | 19261921 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 25568059 | G-A | Hetero | INTERGENIC |
Deletions: 12
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr2 | 820560 | 820563 | 3 | |
| Deletion | Chr4 | 7798513 | 7798520 | 7 | |
| Deletion | Chr12 | 14145655 | 14145658 | 3 | |
| Deletion | Chr2 | 14702001 | 14734000 | 31999 | 3 |
| Deletion | Chr10 | 15176780 | 15176796 | 16 | OsKitaake10g096400 |
| Deletion | Chr11 | 15684890 | 15684904 | 14 | |
| Deletion | Chr5 | 17803727 | 17803729 | 2 | OsKitaake05g137200 |
| Deletion | Chr2 | 19002650 | 19002652 | 2 | OsKitaake02g186101 |
| Deletion | Chr10 | 20180869 | 20180872 | 3 | OsKitaake10g153300 |
| Deletion | Chr8 | 23125867 | 23125868 | 1 | |
| Deletion | Chr3 | 23387875 | 23387877 | 2 | |
| Deletion | Chr1 | 44003821 | 44003829 | 8 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr2 | 29830062 | 29830065 | 2 |