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Mutant Information

Mutant Name	FN1065-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1065-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 51

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 117743 C-T Hetero INTERGENIC
SBS Chr1 20512687 C-T Homo INTERGENIC
SBS Chr1 39553662 G-A Hetero INTERGENIC
SBS Chr2 91280 G-A Hetero INTERGENIC
SBS Chr2 8213919 G-A Hetero INTERGENIC
SBS Chr2 10397917 T-C Hetero INTERGENIC
SBS Chr3 736169 G-A Hetero INTERGENIC
SBS Chr3 9872618 A-T Hetero SYNONYMOUS_CODING
SBS Chr3 10150898 T-G Homo INTERGENIC
SBS Chr3 13609318 T-C Hetero INTERGENIC
SBS Chr3 22441896 G-A Hetero INTERGENIC
SBS Chr3 23129113 C-T Hetero INTERGENIC
SBS Chr4 3503345 T-A Hetero INTERGENIC
SBS Chr4 3825424 T-C Homo INTERGENIC
SBS Chr4 28974717 A-G Hetero INTERGENIC
SBS Chr5 8278344 C-T Hetero INTRON
SBS Chr5 8977564 G-A Hetero INTERGENIC
SBS Chr5 17159864 A-G Hetero INTERGENIC
SBS Chr5 28013709 C-A Homo NON_SYNONYMOUS_CODING OsKitaake05g258400
SBS Chr5 28819164 C-A Hetero INTERGENIC
SBS Chr6 11564966 C-T Homo INTERGENIC
SBS Chr6 13386980 G-A Homo INTERGENIC
SBS Chr6 23896561 A-G Hetero INTRON
SBS Chr6 24205135 T-A Homo INTERGENIC
SBS Chr6 26132552 C-T Homo INTERGENIC
SBS Chr6 27815593 C-T Hetero INTERGENIC
SBS Chr7 5791742 A-C Hetero INTERGENIC
SBS Chr7 5791743 C-A Hetero INTERGENIC
SBS Chr7 9058993 A-T Hetero INTERGENIC
SBS Chr7 10754127 C-T Hetero INTERGENIC
SBS Chr7 13769404 T-C Hetero INTERGENIC
SBS Chr7 14372713 G-A Hetero INTERGENIC
SBS Chr7 22752860 C-T Hetero INTERGENIC
SBS Chr7 23478226 A-G Hetero INTERGENIC
SBS Chr7 26858948 G-T Hetero INTRON
SBS Chr8 7532889 G-A Hetero INTERGENIC
SBS Chr8 13012355 C-A Homo INTERGENIC
SBS Chr8 27479109 G-A Homo INTERGENIC
SBS Chr9 10454366 C-T Homo INTERGENIC
SBS Chr9 12340717 A-G Hetero INTERGENIC
SBS Chr9 17714477 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake09g134100
SBS Chr10 22270064 G-T Homo INTRON
SBS Chr11 7057215 A-C Homo INTERGENIC
SBS Chr11 7057229 G-A Homo INTERGENIC
SBS Chr11 19782951 A-T Homo INTRON
SBS Chr11 22675914 T-C Homo INTERGENIC
SBS Chr11 24889619 C-T Hetero INTERGENIC
SBS Chr12 1855326 C-T Hetero UTR_3_PRIME
SBS Chr12 9753579 T-G Hetero INTERGENIC
SBS Chr12 17785505 T-C Hetero INTERGENIC
SBS Chr12 17977753 T-C Hetero SYNONYMOUS_CODING

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 7726001 8169000 442999 38
Deletion Chr11 8722064 8722066 2
Deletion Chr12 9876659 9876805 146
Deletion Chr11 10868209 10868214 5
Deletion Chr7 11076001 11087000 10999 OsKitaake07g104332
Deletion Chr11 12369964 12369965 1
Deletion Chr6 18144836 18144841 5
Deletion Chr10 18241565 18241582 17
Deletion Chr11 18926591 18926594 3
Deletion Chr10 20953833 20953840 7
Deletion Chr2 30175952 30175958 6
Deletion Chr2 32982587 32982604 17 OsKitaake02g339100

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 7564703 7564706 2
Insertion Chr5 18507813 18507816 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 21430017 21673311 OsKitaake09g190600
Inversion Chr9 21673325 22524290 OsKitaake09g190600

Translocations: 6

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 6906 Chr5 8439815
Translocation Chr8 4074587 Chr6 6354488
Translocation Chr8 4074835 Chr7 7481265
Translocation Chr7 7481265 Chr6 6354488
Translocation Chr7 7481921 Chr6 6354481
Translocation Chr9 21673327 Chr3 9595239 OsKitaake09g190600

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	117743	C-T	Hetero	INTERGENIC
SBS	Chr1	20512687	C-T	Homo	INTERGENIC
SBS	Chr1	39553662	G-A	Hetero	INTERGENIC
SBS	Chr2	91280	G-A	Hetero	INTERGENIC
SBS	Chr2	8213919	G-A	Hetero	INTERGENIC
SBS	Chr2	10397917	T-C	Hetero	INTERGENIC
SBS	Chr3	736169	G-A	Hetero	INTERGENIC
SBS	Chr3	9872618	A-T	Hetero	SYNONYMOUS_CODING
SBS	Chr3	10150898	T-G	Homo	INTERGENIC
SBS	Chr3	13609318	T-C	Hetero	INTERGENIC
SBS	Chr3	22441896	G-A	Hetero	INTERGENIC
SBS	Chr3	23129113	C-T	Hetero	INTERGENIC
SBS	Chr4	3503345	T-A	Hetero	INTERGENIC
SBS	Chr4	3825424	T-C	Homo	INTERGENIC
SBS	Chr4	28974717	A-G	Hetero	INTERGENIC
SBS	Chr5	8278344	C-T	Hetero	INTRON
SBS	Chr5	8977564	G-A	Hetero	INTERGENIC
SBS	Chr5	17159864	A-G	Hetero	INTERGENIC
SBS	Chr5	28013709	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake05g258400
SBS	Chr5	28819164	C-A	Hetero	INTERGENIC
SBS	Chr6	11564966	C-T	Homo	INTERGENIC
SBS	Chr6	13386980	G-A	Homo	INTERGENIC
SBS	Chr6	23896561	A-G	Hetero	INTRON
SBS	Chr6	24205135	T-A	Homo	INTERGENIC
SBS	Chr6	26132552	C-T	Homo	INTERGENIC
SBS	Chr6	27815593	C-T	Hetero	INTERGENIC
SBS	Chr7	5791742	A-C	Hetero	INTERGENIC
SBS	Chr7	5791743	C-A	Hetero	INTERGENIC
SBS	Chr7	9058993	A-T	Hetero	INTERGENIC
SBS	Chr7	10754127	C-T	Hetero	INTERGENIC
SBS	Chr7	13769404	T-C	Hetero	INTERGENIC
SBS	Chr7	14372713	G-A	Hetero	INTERGENIC
SBS	Chr7	22752860	C-T	Hetero	INTERGENIC
SBS	Chr7	23478226	A-G	Hetero	INTERGENIC
SBS	Chr7	26858948	G-T	Hetero	INTRON
SBS	Chr8	7532889	G-A	Hetero	INTERGENIC
SBS	Chr8	13012355	C-A	Homo	INTERGENIC
SBS	Chr8	27479109	G-A	Homo	INTERGENIC
SBS	Chr9	10454366	C-T	Homo	INTERGENIC
SBS	Chr9	12340717	A-G	Hetero	INTERGENIC
SBS	Chr9	17714477	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g134100
SBS	Chr10	22270064	G-T	Homo	INTRON
SBS	Chr11	7057215	A-C	Homo	INTERGENIC
SBS	Chr11	7057229	G-A	Homo	INTERGENIC
SBS	Chr11	19782951	A-T	Homo	INTRON
SBS	Chr11	22675914	T-C	Homo	INTERGENIC
SBS	Chr11	24889619	C-T	Hetero	INTERGENIC
SBS	Chr12	1855326	C-T	Hetero	UTR_3_PRIME
SBS	Chr12	9753579	T-G	Hetero	INTERGENIC
SBS	Chr12	17785505	T-C	Hetero	INTERGENIC
SBS	Chr12	17977753	T-C	Hetero	SYNONYMOUS_CODING

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	7726001	8169000	442999	38
Deletion	Chr11	8722064	8722066	2
Deletion	Chr12	9876659	9876805	146
Deletion	Chr11	10868209	10868214	5
Deletion	Chr7	11076001	11087000	10999	OsKitaake07g104332
Deletion	Chr11	12369964	12369965	1
Deletion	Chr6	18144836	18144841	5
Deletion	Chr10	18241565	18241582	17
Deletion	Chr11	18926591	18926594	3
Deletion	Chr10	20953833	20953840	7
Deletion	Chr2	30175952	30175958	6
Deletion	Chr2	32982587	32982604	17	OsKitaake02g339100

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	21430017	21673311	OsKitaake09g190600
Inversion	Chr9	21673325	22524290	OsKitaake09g190600

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes