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| Mutant Information |
|---|
| Mutant Name | FN1067-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1067-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 29
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 955846 | G-A | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr1 | 5218108 | G-A | Homo | UTR_3_PRIME | |
| SBS | Chr2 | 31126006 | G-T | Hetero | INTRON | |
| SBS | Chr2 | 31750672 | A-C | Hetero | INTRON | |
| SBS | Chr2 | 33604295 | A-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 3650296 | C-T | Hetero | INTRON | |
| SBS | Chr3 | 21360800 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 26243310 | C-G | Homo | INTERGENIC | |
| SBS | Chr3 | 29801182 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 13376654 | T-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 16941332 | T-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 35951786 | T-A | Homo | INTERGENIC | |
| SBS | Chr5 | 25461813 | A-G | Homo | INTERGENIC | |
| SBS | Chr6 | 6337332 | C-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 6657206 | A-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 27637534 | T-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 6772903 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 9817478 | A-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 16700068 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 19117781 | C-T | Homo | INTERGENIC | |
| SBS | Chr9 | 4254524 | C-G | Homo | INTERGENIC | |
| SBS | Chr9 | 12676960 | A-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 12854723 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 9914287 | C-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake10g058100 |
| SBS | Chr10 | 12934959 | T-C | Homo | INTERGENIC | |
| SBS | Chr11 | 12229715 | C-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 14483538 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 7754287 | C-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 17187214 | G-T | Hetero | INTERGENIC |
Deletions: 20
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr1 | 1519144 | 1519145 | 1 | |
| Deletion | Chr8 | 6002673 | 6002675 | 2 | |
| Deletion | Chr5 | 8808911 | 8808912 | 1 | |
| Deletion | Chr7 | 9008048 | 9008050 | 2 | |
| Deletion | Chr5 | 9052451 | 9052457 | 6 | |
| Deletion | Chr2 | 9117922 | 9117924 | 2 | |
| Deletion | Chr9 | 11497310 | 11497312 | 2 | OsKitaake09g071700 |
| Deletion | Chr6 | 17085342 | 17085345 | 3 | |
| Deletion | Chr3 | 17298569 | 17298588 | 19 | |
| Deletion | Chr7 | 18398741 | 18398747 | 6 | |
| Deletion | Chr1 | 18882055 | 18882056 | 1 | |
| Deletion | Chr1 | 22725741 | 22725742 | 1 | |
| Deletion | Chr6 | 26865479 | 26865480 | 1 | |
| Deletion | Chr1 | 27410961 | 27410962 | 1 | OsKitaake01g266700 |
| Deletion | Chr2 | 28954001 | 28996000 | 41999 | 2 |
| Deletion | Chr2 | 29173001 | 29198000 | 24999 | 2 |
| Deletion | Chr3 | 30400840 | 30400851 | 11 | |
| Deletion | Chr2 | 36182485 | 36182486 | 1 | OsKitaake02g382500 |
| Deletion | Chr2 | 36674877 | 36674878 | 1 | |
| Deletion | Chr1 | 38147932 | 38147935 | 3 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 27872045 | 27872048 | 2 | |
| Insertion | Chr1 | 36723632 | 36723635 | 2 | |
| Insertion | Chr11 | 1939456 | 1939459 | 2 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr8 | 20989220 | 21448472 | OsKitaake08g157800 |
| Inversion | Chr8 | 20989226 | 21448607 | OsKitaake08g157800 |
Translocations: 3
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr10 | 19166393 | Chr6 | 7344156 | OsKitaake06g094800 |
| Translocation | Chr10 | 19166394 | Chr6 | 7332720 | |
| Translocation | Chr7 | 20500994 | Chr2 | 29195434 |