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Mutant Information

Mutant Name	FN1068-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1068-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 36

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 12742884 T-A Hetero INTERGENIC
SBS Chr1 14549554 G-A Hetero INTERGENIC
SBS Chr1 38741610 A-T Hetero INTERGENIC
SBS Chr1 44165630 A-G Homo INTERGENIC
SBS Chr2 2945426 G-A Hetero INTERGENIC
SBS Chr2 3868527 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g055700
SBS Chr2 9406228 C-G Hetero INTERGENIC
SBS Chr2 9801819 G-T Hetero INTERGENIC
SBS Chr2 17962210 C-A Hetero INTERGENIC
SBS Chr2 19776376 A-T Hetero INTERGENIC
SBS Chr2 19776378 G-C Hetero INTERGENIC
SBS Chr2 23763631 G-A Homo INTERGENIC
SBS Chr2 29020775 A-G Hetero INTERGENIC
SBS Chr3 24390477 G-A Hetero INTRON
SBS Chr3 26647599 T-C Homo INTERGENIC
SBS Chr4 26800860 C-T Hetero INTRON
SBS Chr4 27808189 T-A Homo INTERGENIC
SBS Chr4 30244490 G-A Homo INTERGENIC
SBS Chr5 17354668 C-A Homo INTERGENIC
SBS Chr5 26031404 G-A Hetero INTERGENIC
SBS Chr6 651897 G-T Hetero INTERGENIC
SBS Chr6 23954789 G-T Hetero INTERGENIC
SBS Chr8 13487631 C-T Hetero INTERGENIC
SBS Chr8 16046098 G-A Hetero INTERGENIC
SBS Chr8 24034473 G-A Hetero INTERGENIC
SBS Chr9 843826 T-A Homo INTRON
SBS Chr9 3287135 A-T Homo INTERGENIC
SBS Chr9 9265495 T-C Hetero INTERGENIC
SBS Chr9 17378799 A-G Homo NON_SYNONYMOUS_CODING OsKitaake09g130400
SBS Chr9 17378800 C-A Homo NON_SYNONYMOUS_CODING OsKitaake09g130400
SBS Chr10 10535352 C-A Hetero SYNONYMOUS_CODING
SBS Chr10 18951591 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake10g135200
SBS Chr10 18951595 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake10g135200
SBS Chr11 11281665 C-A Hetero INTERGENIC
SBS Chr11 14541697 G-A Homo INTRON
SBS Chr11 26863409 T-G Homo INTERGENIC

Deletions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 1485718 1486109 391
Deletion Chr3 3051001 3173000 121999 19
Deletion Chr8 6949879 6949880 1
Deletion Chr5 8237001 8299000 61999 2
Deletion Chr5 12394221 12394224 3
Deletion Chr9 20239740 20239742 2
Deletion Chr4 28109619 28109620 1

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 4528057 4528060 2
Insertion Chr9 7346716 7346719 2
Insertion Chr11 14625648 14625651 2

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 18044448 18389334
Inversion Chr10 18044451 18389345
Inversion Chr10 19992310 20228140
Inversion Chr10 19992316 20239645
Inversion Chr3 23799786 24757594
Inversion Chr3 23799808 24757600

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 3294206 Chr5 9397763
Translocation Chr9 3296553 Chr5 8488373
Translocation Chr9 4403930 Chr3 23279748 OsKitaake03g250400
Translocation Chr9 4405445 Chr3 23279742 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12742884	T-A	Hetero	INTERGENIC
SBS	Chr1	14549554	G-A	Hetero	INTERGENIC
SBS	Chr1	38741610	A-T	Hetero	INTERGENIC
SBS	Chr1	44165630	A-G	Homo	INTERGENIC
SBS	Chr2	2945426	G-A	Hetero	INTERGENIC
SBS	Chr2	3868527	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g055700
SBS	Chr2	9406228	C-G	Hetero	INTERGENIC
SBS	Chr2	9801819	G-T	Hetero	INTERGENIC
SBS	Chr2	17962210	C-A	Hetero	INTERGENIC
SBS	Chr2	19776376	A-T	Hetero	INTERGENIC
SBS	Chr2	19776378	G-C	Hetero	INTERGENIC
SBS	Chr2	23763631	G-A	Homo	INTERGENIC
SBS	Chr2	29020775	A-G	Hetero	INTERGENIC
SBS	Chr3	24390477	G-A	Hetero	INTRON
SBS	Chr3	26647599	T-C	Homo	INTERGENIC
SBS	Chr4	26800860	C-T	Hetero	INTRON
SBS	Chr4	27808189	T-A	Homo	INTERGENIC
SBS	Chr4	30244490	G-A	Homo	INTERGENIC
SBS	Chr5	17354668	C-A	Homo	INTERGENIC
SBS	Chr5	26031404	G-A	Hetero	INTERGENIC
SBS	Chr6	651897	G-T	Hetero	INTERGENIC
SBS	Chr6	23954789	G-T	Hetero	INTERGENIC
SBS	Chr8	13487631	C-T	Hetero	INTERGENIC
SBS	Chr8	16046098	G-A	Hetero	INTERGENIC
SBS	Chr8	24034473	G-A	Hetero	INTERGENIC
SBS	Chr9	843826	T-A	Homo	INTRON
SBS	Chr9	3287135	A-T	Homo	INTERGENIC
SBS	Chr9	9265495	T-C	Hetero	INTERGENIC
SBS	Chr9	17378799	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake09g130400
SBS	Chr9	17378800	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake09g130400
SBS	Chr10	10535352	C-A	Hetero	SYNONYMOUS_CODING
SBS	Chr10	18951591	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g135200
SBS	Chr10	18951595	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g135200
SBS	Chr11	11281665	C-A	Hetero	INTERGENIC
SBS	Chr11	14541697	G-A	Homo	INTRON
SBS	Chr11	26863409	T-G	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	1485718	1486109	391
Deletion	Chr3	3051001	3173000	121999	19
Deletion	Chr8	6949879	6949880	1
Deletion	Chr5	8237001	8299000	61999	2
Deletion	Chr5	12394221	12394224	3
Deletion	Chr9	20239740	20239742	2
Deletion	Chr4	28109619	28109620	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	18044448	18389334
Inversion	Chr10	18044451	18389345
Inversion	Chr10	19992310	20228140
Inversion	Chr10	19992316	20239645
Inversion	Chr3	23799786	24757594
Inversion	Chr3	23799808	24757600

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes