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Mutant Information

Mutant Name	FN1069-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1069-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 35

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 524123 A-G Hetero INTERGENIC
SBS Chr1 10106709 C-A Hetero UTR_5_PRIME
SBS Chr1 14435774 C-T Hetero INTERGENIC
SBS Chr1 42831049 G-A Hetero INTERGENIC
SBS Chr2 5855058 C-G Homo INTERGENIC
SBS Chr2 8525130 C-T Hetero INTERGENIC
SBS Chr3 14343143 G-A Hetero INTERGENIC
SBS Chr3 16448403 G-C Hetero INTERGENIC
SBS Chr3 16825849 T-A Hetero INTERGENIC
SBS Chr3 16825850 C-A Hetero INTERGENIC
SBS Chr3 24657553 A-G Hetero INTERGENIC
SBS Chr3 28721479 A-G Hetero INTERGENIC
SBS Chr4 9376597 C-T Hetero INTERGENIC
SBS Chr4 16372514 G-A Hetero INTRON
SBS Chr4 16897264 A-C Hetero INTERGENIC
SBS Chr4 17192315 T-A Hetero INTERGENIC
SBS Chr5 2038446 C-G Hetero INTRON
SBS Chr5 5461758 A-G Hetero INTERGENIC
SBS Chr6 24447838 C-T Hetero INTERGENIC
SBS Chr7 7756952 C-T Homo INTERGENIC
SBS Chr7 9733219 G-A Homo INTERGENIC
SBS Chr7 13932844 T-A Hetero INTERGENIC
SBS Chr7 16543078 C-A Homo INTERGENIC
SBS Chr8 9842901 A-C Hetero INTERGENIC
SBS Chr10 4522307 A-G Hetero INTERGENIC
SBS Chr10 11821177 G-A Hetero INTERGENIC
SBS Chr11 5676174 C-A Hetero INTERGENIC
SBS Chr11 13042800 C-A Hetero INTERGENIC
SBS Chr11 21478622 C-G Hetero INTERGENIC
SBS Chr11 25952480 G-A Hetero INTERGENIC
SBS Chr12 4397430 C-T Hetero INTERGENIC
SBS Chr12 4932307 A-T Homo INTERGENIC
SBS Chr12 7708934 G-A Homo INTERGENIC
SBS Chr12 15238112 T-C Homo INTERGENIC
SBS Chr12 18085038 A-T Hetero INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 1277001 1314000 36999 2
Deletion Chr11 2711973 2711974 1
Deletion Chr6 4906226 4906229 3
Deletion Chr11 6191288 6191292 4
Deletion Chr4 6378295 6378296 1
Deletion Chr12 10368278 10368283 5
Deletion Chr4 12367878 12367879 1
Deletion Chr5 12860019 12860020 1
Deletion Chr5 13812469 13812479 10
Deletion Chr4 15736722 15736724 2
Deletion Chr12 16640308 16640317 9
Deletion Chr11 28630026 28630028 2
Deletion Chr3 31667028 31667030 2
Deletion Chr1 36475456 36475457 1

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 33045679 33045682 2
Insertion Chr3 16285087 16285090 2
Insertion Chr4 19570406 19570413 6
Insertion Chr5 10666261 10666264 2
Insertion Chr6 26744194 26744197 2
Insertion Chr8 21461650 21461653 2

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 6720020 6720298 OsKitaake07g077100

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 13284540 Chr3 12149434 2
Translocation Chr11 13286047 Chr3 12149433 2
Translocation Chr10 18119677 Chr7 3986022 2
Translocation Chr10 18119683 Chr7 3986034 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	524123	A-G	Hetero	INTERGENIC
SBS	Chr1	10106709	C-A	Hetero	UTR_5_PRIME
SBS	Chr1	14435774	C-T	Hetero	INTERGENIC
SBS	Chr1	42831049	G-A	Hetero	INTERGENIC
SBS	Chr2	5855058	C-G	Homo	INTERGENIC
SBS	Chr2	8525130	C-T	Hetero	INTERGENIC
SBS	Chr3	14343143	G-A	Hetero	INTERGENIC
SBS	Chr3	16448403	G-C	Hetero	INTERGENIC
SBS	Chr3	16825849	T-A	Hetero	INTERGENIC
SBS	Chr3	16825850	C-A	Hetero	INTERGENIC
SBS	Chr3	24657553	A-G	Hetero	INTERGENIC
SBS	Chr3	28721479	A-G	Hetero	INTERGENIC
SBS	Chr4	9376597	C-T	Hetero	INTERGENIC
SBS	Chr4	16372514	G-A	Hetero	INTRON
SBS	Chr4	16897264	A-C	Hetero	INTERGENIC
SBS	Chr4	17192315	T-A	Hetero	INTERGENIC
SBS	Chr5	2038446	C-G	Hetero	INTRON
SBS	Chr5	5461758	A-G	Hetero	INTERGENIC
SBS	Chr6	24447838	C-T	Hetero	INTERGENIC
SBS	Chr7	7756952	C-T	Homo	INTERGENIC
SBS	Chr7	9733219	G-A	Homo	INTERGENIC
SBS	Chr7	13932844	T-A	Hetero	INTERGENIC
SBS	Chr7	16543078	C-A	Homo	INTERGENIC
SBS	Chr8	9842901	A-C	Hetero	INTERGENIC
SBS	Chr10	4522307	A-G	Hetero	INTERGENIC
SBS	Chr10	11821177	G-A	Hetero	INTERGENIC
SBS	Chr11	5676174	C-A	Hetero	INTERGENIC
SBS	Chr11	13042800	C-A	Hetero	INTERGENIC
SBS	Chr11	21478622	C-G	Hetero	INTERGENIC
SBS	Chr11	25952480	G-A	Hetero	INTERGENIC
SBS	Chr12	4397430	C-T	Hetero	INTERGENIC
SBS	Chr12	4932307	A-T	Homo	INTERGENIC
SBS	Chr12	7708934	G-A	Homo	INTERGENIC
SBS	Chr12	15238112	T-C	Homo	INTERGENIC
SBS	Chr12	18085038	A-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	1277001	1314000	36999	2
Deletion	Chr11	2711973	2711974	1
Deletion	Chr6	4906226	4906229	3
Deletion	Chr11	6191288	6191292	4
Deletion	Chr4	6378295	6378296	1
Deletion	Chr12	10368278	10368283	5
Deletion	Chr4	12367878	12367879	1
Deletion	Chr5	12860019	12860020	1
Deletion	Chr5	13812469	13812479	10
Deletion	Chr4	15736722	15736724	2
Deletion	Chr12	16640308	16640317	9
Deletion	Chr11	28630026	28630028	2
Deletion	Chr3	31667028	31667030	2
Deletion	Chr1	36475456	36475457	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	6720020	6720298	OsKitaake07g077100

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes