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Mutant Information

Mutant Name	FN1070-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1070-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 23

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 10799258 G-A Homo INTERGENIC
SBS Chr1 13964591 G-A Hetero INTERGENIC
SBS Chr1 38693821 G-A Hetero INTRON
SBS Chr2 1394212 C-T Hetero INTRON
SBS Chr2 2121679 C-T Homo INTERGENIC
SBS Chr3 20179677 C-T Homo INTERGENIC
SBS Chr3 34981392 T-C Hetero INTERGENIC
SBS Chr4 5598865 G-A Hetero INTERGENIC
SBS Chr4 12078354 T-A Homo UTR_5_PRIME
SBS Chr4 15333883 C-T Hetero INTERGENIC
SBS Chr4 17933657 C-T Hetero INTERGENIC
SBS Chr4 18557945 C-T Homo INTRON
SBS Chr4 20218846 T-C Homo INTERGENIC
SBS Chr7 2757731 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake07g035700
SBS Chr7 20681924 C-G Homo INTERGENIC
SBS Chr8 3767461 A-G Homo UTR_3_PRIME
SBS Chr8 6955114 G-A Hetero INTERGENIC
SBS Chr9 13480441 G-A Hetero INTERGENIC
SBS Chr9 16910586 T-C Hetero INTRON
SBS Chr10 3838519 G-A Hetero INTRON
SBS Chr11 6868781 T-A Hetero INTERGENIC
SBS Chr11 10601513 G-A Hetero INTERGENIC
SBS Chr11 10988746 G-A Hetero INTERGENIC

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 2131756 2131758 2
Deletion Chr2 13817172 13817367 195
Deletion Chr8 17119630 17119632 2
Deletion Chr7 20841384 20841388 4
Deletion Chr1 20962173 20962177 4
Deletion Chr5 23268781 23268783 2
Deletion Chr8 25605148 25605150 2
Deletion Chr4 28155543 28155544 1
Deletion Chr2 34230457 34230463 6

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 25610951 25610954 2
Insertion Chr6 26810422 26810425 2
Insertion Chr7 23500551 23500554 2
Insertion Chr7 24838880 24838885 4
Insertion Chr11 16917910 16917913 2
Insertion Chr11 24049691 24049694 2
Insertion Chr3 697741 697745 3

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 21230867 Chr1 2125522
Translocation Chr12 21231505 Chr1 2125518

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10799258	G-A	Homo	INTERGENIC
SBS	Chr1	13964591	G-A	Hetero	INTERGENIC
SBS	Chr1	38693821	G-A	Hetero	INTRON
SBS	Chr2	1394212	C-T	Hetero	INTRON
SBS	Chr2	2121679	C-T	Homo	INTERGENIC
SBS	Chr3	20179677	C-T	Homo	INTERGENIC
SBS	Chr3	34981392	T-C	Hetero	INTERGENIC
SBS	Chr4	5598865	G-A	Hetero	INTERGENIC
SBS	Chr4	12078354	T-A	Homo	UTR_5_PRIME
SBS	Chr4	15333883	C-T	Hetero	INTERGENIC
SBS	Chr4	17933657	C-T	Hetero	INTERGENIC
SBS	Chr4	18557945	C-T	Homo	INTRON
SBS	Chr4	20218846	T-C	Homo	INTERGENIC
SBS	Chr7	2757731	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g035700
SBS	Chr7	20681924	C-G	Homo	INTERGENIC
SBS	Chr8	3767461	A-G	Homo	UTR_3_PRIME
SBS	Chr8	6955114	G-A	Hetero	INTERGENIC
SBS	Chr9	13480441	G-A	Hetero	INTERGENIC
SBS	Chr9	16910586	T-C	Hetero	INTRON
SBS	Chr10	3838519	G-A	Hetero	INTRON
SBS	Chr11	6868781	T-A	Hetero	INTERGENIC
SBS	Chr11	10601513	G-A	Hetero	INTERGENIC
SBS	Chr11	10988746	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	2131756	2131758	2
Deletion	Chr2	13817172	13817367	195
Deletion	Chr8	17119630	17119632	2
Deletion	Chr7	20841384	20841388	4
Deletion	Chr1	20962173	20962177	4
Deletion	Chr5	23268781	23268783	2
Deletion	Chr8	25605148	25605150	2
Deletion	Chr4	28155543	28155544	1
Deletion	Chr2	34230457	34230463	6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	21230867	Chr1	2125522
Translocation	Chr12	21231505	Chr1	2125518

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes