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Mutant Information

Mutant Name	FN1071-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1071-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 29

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 10526171 G-A Hetero INTERGENIC
SBS Chr1 10530109 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g131600
SBS Chr1 17505143 C-T Hetero INTERGENIC
SBS Chr1 22754295 C-G Hetero INTERGENIC
SBS Chr1 25678249 A-T Hetero INTRON
SBS Chr1 40860651 G-A Hetero INTERGENIC
SBS Chr2 4531691 G-T Homo INTRON
SBS Chr2 4531692 C-T Homo INTRON
SBS Chr2 4870990 G-T Homo START_GAINED
SBS Chr2 14908834 G-A Hetero INTERGENIC
SBS Chr2 14930177 T-G Homo INTERGENIC
SBS Chr3 14333010 C-T Hetero INTERGENIC
SBS Chr4 13706370 G-A Homo INTERGENIC
SBS Chr5 11138276 T-C Homo INTERGENIC
SBS Chr5 17840765 A-T Hetero INTRON
SBS Chr5 21727546 A-G Hetero INTERGENIC
SBS Chr5 22780334 T-A Hetero INTERGENIC
SBS Chr5 25839088 C-A Hetero INTRON
SBS Chr6 810966 T-A Hetero INTERGENIC
SBS Chr6 13191240 C-T Hetero INTERGENIC
SBS Chr6 26476289 G-A Hetero INTERGENIC
SBS Chr7 10806736 C-T Hetero INTERGENIC
SBS Chr8 9580824 A-T Hetero INTERGENIC
SBS Chr9 6774617 A-C Hetero INTERGENIC
SBS Chr10 19061161 C-T Hetero UTR_5_PRIME
SBS Chr10 22741675 G-A Homo INTERGENIC
SBS Chr11 20962833 A-G Hetero INTERGENIC
SBS Chr12 2267064 C-T Homo INTERGENIC
SBS Chr12 26723942 G-T Hetero INTERGENIC

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 33001 47000 13999
Deletion Chr7 9030012 9030027 15
Deletion Chr8 9730721 9730724 3
Deletion Chr7 15608904 15608905 1
Deletion Chr9 17447609 17447611 2
Deletion Chr10 19250685 19250686 1
Deletion Chr3 22461585 22461756 171
Deletion Chr7 27893001 27917000 23999 6
Deletion Chr4 29520353 29520359 6
Deletion Chr4 29769776 29769780 4
Deletion Chr1 36968406 36968407 1

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 18362384 18362387 2
Insertion Chr3 11213506 11213509 2 OsKitaake03g154100
Insertion Chr5 5510289 5510292 2
Insertion Chr7 14087429 14087432 2
Insertion Chr12 10531344 10531347 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 6516539 6796643 OsKitaake02g088400
Inversion Chr2 6516563 6796670 OsKitaake02g088400
Inversion Chr3 25019947 25186702
Inversion Chr3 25019959 25186702

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 11834925 Chr1 19342536

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10526171	G-A	Hetero	INTERGENIC
SBS	Chr1	10530109	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g131600
SBS	Chr1	17505143	C-T	Hetero	INTERGENIC
SBS	Chr1	22754295	C-G	Hetero	INTERGENIC
SBS	Chr1	25678249	A-T	Hetero	INTRON
SBS	Chr1	40860651	G-A	Hetero	INTERGENIC
SBS	Chr2	4531691	G-T	Homo	INTRON
SBS	Chr2	4531692	C-T	Homo	INTRON
SBS	Chr2	4870990	G-T	Homo	START_GAINED
SBS	Chr2	14908834	G-A	Hetero	INTERGENIC
SBS	Chr2	14930177	T-G	Homo	INTERGENIC
SBS	Chr3	14333010	C-T	Hetero	INTERGENIC
SBS	Chr4	13706370	G-A	Homo	INTERGENIC
SBS	Chr5	11138276	T-C	Homo	INTERGENIC
SBS	Chr5	17840765	A-T	Hetero	INTRON
SBS	Chr5	21727546	A-G	Hetero	INTERGENIC
SBS	Chr5	22780334	T-A	Hetero	INTERGENIC
SBS	Chr5	25839088	C-A	Hetero	INTRON
SBS	Chr6	810966	T-A	Hetero	INTERGENIC
SBS	Chr6	13191240	C-T	Hetero	INTERGENIC
SBS	Chr6	26476289	G-A	Hetero	INTERGENIC
SBS	Chr7	10806736	C-T	Hetero	INTERGENIC
SBS	Chr8	9580824	A-T	Hetero	INTERGENIC
SBS	Chr9	6774617	A-C	Hetero	INTERGENIC
SBS	Chr10	19061161	C-T	Hetero	UTR_5_PRIME
SBS	Chr10	22741675	G-A	Homo	INTERGENIC
SBS	Chr11	20962833	A-G	Hetero	INTERGENIC
SBS	Chr12	2267064	C-T	Homo	INTERGENIC
SBS	Chr12	26723942	G-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	33001	47000	13999
Deletion	Chr7	9030012	9030027	15
Deletion	Chr8	9730721	9730724	3
Deletion	Chr7	15608904	15608905	1
Deletion	Chr9	17447609	17447611	2
Deletion	Chr10	19250685	19250686	1
Deletion	Chr3	22461585	22461756	171
Deletion	Chr7	27893001	27917000	23999	6
Deletion	Chr4	29520353	29520359	6
Deletion	Chr4	29769776	29769780	4
Deletion	Chr1	36968406	36968407	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	6516539	6796643	OsKitaake02g088400
Inversion	Chr2	6516563	6796670	OsKitaake02g088400
Inversion	Chr3	25019947	25186702
Inversion	Chr3	25019959	25186702

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes