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Mutant Information

Mutant Name	FN1072-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1072-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 44

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 11001210 A-G Hetero INTRON
SBS Chr1 13729745 G-A Hetero INTRON
SBS Chr1 15790107 C-T Hetero INTRON
SBS Chr1 16554914 G-A Hetero INTERGENIC
SBS Chr1 22862971 A-T Hetero INTERGENIC
SBS Chr2 10769744 T-G Hetero INTERGENIC
SBS Chr2 11434648 T-C Hetero INTRON
SBS Chr2 20018499 G-T Homo INTRON
SBS Chr2 20018502 T-A Homo INTRON
SBS Chr2 25635740 G-T Hetero INTERGENIC
SBS Chr2 36197065 A-G Hetero INTERGENIC
SBS Chr3 1263360 G-A Hetero INTERGENIC
SBS Chr3 16482786 C-T Hetero INTERGENIC
SBS Chr3 18690079 T-G Hetero SPLICE_SITE_ACCEPTOR OsKitaake03g225500
SBS Chr3 24636393 A-G Hetero INTERGENIC
SBS Chr3 25914525 G-T Hetero UTR_5_PRIME
SBS Chr4 2238126 G-A Homo INTRON
SBS Chr4 14716936 C-T Homo INTERGENIC
SBS Chr4 18557322 T-G Homo INTRON
SBS Chr5 4494228 G-A Hetero INTERGENIC
SBS Chr5 10295799 G-T Hetero INTERGENIC
SBS Chr5 11532360 A-G Hetero INTERGENIC
SBS Chr5 13434593 A-T Hetero INTERGENIC
SBS Chr6 8076448 C-T Hetero INTERGENIC
SBS Chr6 10006568 A-T Hetero INTERGENIC
SBS Chr6 18776249 C-T Homo INTRON
SBS Chr6 28237230 G-T Homo INTERGENIC
SBS Chr7 10366524 G-A Hetero INTERGENIC
SBS Chr7 17309770 G-A Hetero INTERGENIC
SBS Chr7 27857165 A-G Homo INTERGENIC
SBS Chr8 145242 C-A Homo INTERGENIC
SBS Chr8 5257743 G-A Hetero INTERGENIC
SBS Chr8 18254574 C-T Hetero INTERGENIC
SBS Chr8 25426870 T-C Homo INTERGENIC
SBS Chr10 4855281 C-T Homo INTERGENIC
SBS Chr10 5312611 C-T Hetero INTERGENIC
SBS Chr10 13948521 C-G Homo INTERGENIC
SBS Chr10 14221698 G-T Hetero INTERGENIC
SBS Chr10 23702011 A-G Hetero INTRON
SBS Chr11 1835909 T-G Homo INTRON
SBS Chr11 24652573 C-G Homo INTERGENIC
SBS Chr12 19833969 C-T Hetero INTERGENIC
SBS Chr12 21451444 C-T Hetero INTERGENIC
SBS Chr12 25444118 C-T Hetero INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 13244613 13244631 18
Deletion Chr4 14765676 14765686 10
Deletion Chr9 15554838 15554935 97
Deletion Chr3 17031001 17050000 18999 3
Deletion Chr1 17283622 17284286 664
Deletion Chr2 17761070 17761072 2
Deletion Chr2 22074356 22074360 4
Deletion Chr6 22352884 22352891 7
Deletion Chr4 22565772 22565775 3
Deletion Chr7 23057198 23057200 2
Deletion Chr4 23374735 23374748 13
Deletion Chr1 23443851 23443859 8
Deletion Chr11 25036464 25036466 2
Deletion Chr6 30428173 30428174 1 OsKitaake06g286000
Deletion Chr4 30781780 30781782 2
Deletion Chr3 34591001 34608000 16999 3

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 24761923 24761926 2
Insertion Chr6 26818878 26818881 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 14267560 14310115 OsKitaake01g163300
Inversion Chr4 21866779 22026062

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr4 18516698 Chr1 14269601

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11001210	A-G	Hetero	INTRON
SBS	Chr1	13729745	G-A	Hetero	INTRON
SBS	Chr1	15790107	C-T	Hetero	INTRON
SBS	Chr1	16554914	G-A	Hetero	INTERGENIC
SBS	Chr1	22862971	A-T	Hetero	INTERGENIC
SBS	Chr2	10769744	T-G	Hetero	INTERGENIC
SBS	Chr2	11434648	T-C	Hetero	INTRON
SBS	Chr2	20018499	G-T	Homo	INTRON
SBS	Chr2	20018502	T-A	Homo	INTRON
SBS	Chr2	25635740	G-T	Hetero	INTERGENIC
SBS	Chr2	36197065	A-G	Hetero	INTERGENIC
SBS	Chr3	1263360	G-A	Hetero	INTERGENIC
SBS	Chr3	16482786	C-T	Hetero	INTERGENIC
SBS	Chr3	18690079	T-G	Hetero	SPLICE_SITE_ACCEPTOR	OsKitaake03g225500
SBS	Chr3	24636393	A-G	Hetero	INTERGENIC
SBS	Chr3	25914525	G-T	Hetero	UTR_5_PRIME
SBS	Chr4	2238126	G-A	Homo	INTRON
SBS	Chr4	14716936	C-T	Homo	INTERGENIC
SBS	Chr4	18557322	T-G	Homo	INTRON
SBS	Chr5	4494228	G-A	Hetero	INTERGENIC
SBS	Chr5	10295799	G-T	Hetero	INTERGENIC
SBS	Chr5	11532360	A-G	Hetero	INTERGENIC
SBS	Chr5	13434593	A-T	Hetero	INTERGENIC
SBS	Chr6	8076448	C-T	Hetero	INTERGENIC
SBS	Chr6	10006568	A-T	Hetero	INTERGENIC
SBS	Chr6	18776249	C-T	Homo	INTRON
SBS	Chr6	28237230	G-T	Homo	INTERGENIC
SBS	Chr7	10366524	G-A	Hetero	INTERGENIC
SBS	Chr7	17309770	G-A	Hetero	INTERGENIC
SBS	Chr7	27857165	A-G	Homo	INTERGENIC
SBS	Chr8	145242	C-A	Homo	INTERGENIC
SBS	Chr8	5257743	G-A	Hetero	INTERGENIC
SBS	Chr8	18254574	C-T	Hetero	INTERGENIC
SBS	Chr8	25426870	T-C	Homo	INTERGENIC
SBS	Chr10	4855281	C-T	Homo	INTERGENIC
SBS	Chr10	5312611	C-T	Hetero	INTERGENIC
SBS	Chr10	13948521	C-G	Homo	INTERGENIC
SBS	Chr10	14221698	G-T	Hetero	INTERGENIC
SBS	Chr10	23702011	A-G	Hetero	INTRON
SBS	Chr11	1835909	T-G	Homo	INTRON
SBS	Chr11	24652573	C-G	Homo	INTERGENIC
SBS	Chr12	19833969	C-T	Hetero	INTERGENIC
SBS	Chr12	21451444	C-T	Hetero	INTERGENIC
SBS	Chr12	25444118	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	13244613	13244631	18
Deletion	Chr4	14765676	14765686	10
Deletion	Chr9	15554838	15554935	97
Deletion	Chr3	17031001	17050000	18999	3
Deletion	Chr1	17283622	17284286	664
Deletion	Chr2	17761070	17761072	2
Deletion	Chr2	22074356	22074360	4
Deletion	Chr6	22352884	22352891	7
Deletion	Chr4	22565772	22565775	3
Deletion	Chr7	23057198	23057200	2
Deletion	Chr4	23374735	23374748	13
Deletion	Chr1	23443851	23443859	8
Deletion	Chr11	25036464	25036466	2
Deletion	Chr6	30428173	30428174	1	OsKitaake06g286000
Deletion	Chr4	30781780	30781782	2
Deletion	Chr3	34591001	34608000	16999	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	14267560	14310115	OsKitaake01g163300
Inversion	Chr4	21866779	22026062

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes