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Mutant Information

Mutant Name	FN1073-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1073-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 19769355 C-A Hetero INTRON
SBS Chr1 42216105 G-C Hetero INTERGENIC
SBS Chr2 563927 T-C Hetero INTERGENIC
SBS Chr2 8139645 T-A Hetero SPLICE_SITE_REGION
SBS Chr2 15921163 C-T Hetero INTERGENIC
SBS Chr2 25782686 C-T Hetero INTERGENIC
SBS Chr3 12696400 T-G Hetero INTERGENIC
SBS Chr3 34092143 A-G Hetero INTERGENIC
SBS Chr4 4796763 G-C Hetero INTERGENIC
SBS Chr4 12227964 C-T Hetero INTERGENIC
SBS Chr5 2014278 T-C Hetero INTERGENIC
SBS Chr5 8179931 A-C Hetero INTERGENIC
SBS Chr5 10134758 C-A Hetero INTERGENIC
SBS Chr5 13166168 C-T Hetero INTERGENIC
SBS Chr5 24489023 A-T Hetero INTERGENIC
SBS Chr7 6437822 G-A Hetero INTERGENIC
SBS Chr7 13857838 G-A Hetero INTERGENIC
SBS Chr7 14328342 G-A Hetero INTERGENIC
SBS Chr7 14668486 C-T Hetero INTERGENIC
SBS Chr7 16058378 C-T Hetero INTERGENIC
SBS Chr8 3808111 C-T Hetero INTERGENIC
SBS Chr8 18930896 G-A Hetero INTRON
SBS Chr8 27438659 A-T Hetero INTRON
SBS Chr8 27438660 G-T Hetero INTRON
SBS Chr9 6401062 C-A Hetero INTERGENIC
SBS Chr9 19957756 C-T Hetero INTERGENIC
SBS Chr10 6462937 C-G Hetero INTRON
SBS Chr10 13302892 A-G Hetero INTERGENIC
SBS Chr10 16069134 T-C Hetero INTERGENIC
SBS Chr10 18363061 T-A Hetero INTERGENIC
SBS Chr11 1461406 C-T Hetero INTERGENIC
SBS Chr11 7982591 C-T Hetero INTERGENIC
SBS Chr11 10823042 C-T Hetero INTERGENIC
SBS Chr11 29203865 A-C Hetero INTERGENIC
SBS Chr12 2594989 C-T Hetero INTERGENIC
SBS Chr12 7226041 G-A Hetero INTERGENIC
SBS Chr12 7226543 T-C Hetero INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 20090 20091 1
Deletion Chr10 2572647 2572648 1
Deletion Chr9 8380656 8380658 2
Deletion Chr7 10594908 10594911 3
Deletion Chr11 12248067 12248069 2
Deletion Chr11 12525467 12525468 1
Deletion Chr6 15751284 15751285 1
Deletion Chr12 22804097 22804099 2
Deletion Chr4 23616135 23616138 3 OsKitaake04g148700
Deletion Chr3 26174640 26174643 3

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 1566410 1566412 1 OsKitaake04g010800
Insertion Chr3 20013921 20013923 1
Insertion Chr5 12532511 12532513 1
Insertion Chr5 30231639 30231641 1
Insertion Chr9 10160983 10160987 3
Insertion Chr12 11717161 11717163 1

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 5873557 5973165
Inversion Chr7 5873575 5973177
Inversion Chr5 22150608 22548365 2
Inversion Chr5 22150618 22548367 2
Inversion Chr8 24429655 24630296 2
Inversion Chr8 24429660 24630316 2

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 26916091 Chr1 241941 OsKitaake01g003600
Translocation Chr8 26916174 Chr1 241933 OsKitaake01g003600

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	19769355	C-A	Hetero	INTRON
SBS	Chr1	42216105	G-C	Hetero	INTERGENIC
SBS	Chr2	563927	T-C	Hetero	INTERGENIC
SBS	Chr2	8139645	T-A	Hetero	SPLICE_SITE_REGION
SBS	Chr2	15921163	C-T	Hetero	INTERGENIC
SBS	Chr2	25782686	C-T	Hetero	INTERGENIC
SBS	Chr3	12696400	T-G	Hetero	INTERGENIC
SBS	Chr3	34092143	A-G	Hetero	INTERGENIC
SBS	Chr4	4796763	G-C	Hetero	INTERGENIC
SBS	Chr4	12227964	C-T	Hetero	INTERGENIC
SBS	Chr5	2014278	T-C	Hetero	INTERGENIC
SBS	Chr5	8179931	A-C	Hetero	INTERGENIC
SBS	Chr5	10134758	C-A	Hetero	INTERGENIC
SBS	Chr5	13166168	C-T	Hetero	INTERGENIC
SBS	Chr5	24489023	A-T	Hetero	INTERGENIC
SBS	Chr7	6437822	G-A	Hetero	INTERGENIC
SBS	Chr7	13857838	G-A	Hetero	INTERGENIC
SBS	Chr7	14328342	G-A	Hetero	INTERGENIC
SBS	Chr7	14668486	C-T	Hetero	INTERGENIC
SBS	Chr7	16058378	C-T	Hetero	INTERGENIC
SBS	Chr8	3808111	C-T	Hetero	INTERGENIC
SBS	Chr8	18930896	G-A	Hetero	INTRON
SBS	Chr8	27438659	A-T	Hetero	INTRON
SBS	Chr8	27438660	G-T	Hetero	INTRON
SBS	Chr9	6401062	C-A	Hetero	INTERGENIC
SBS	Chr9	19957756	C-T	Hetero	INTERGENIC
SBS	Chr10	6462937	C-G	Hetero	INTRON
SBS	Chr10	13302892	A-G	Hetero	INTERGENIC
SBS	Chr10	16069134	T-C	Hetero	INTERGENIC
SBS	Chr10	18363061	T-A	Hetero	INTERGENIC
SBS	Chr11	1461406	C-T	Hetero	INTERGENIC
SBS	Chr11	7982591	C-T	Hetero	INTERGENIC
SBS	Chr11	10823042	C-T	Hetero	INTERGENIC
SBS	Chr11	29203865	A-C	Hetero	INTERGENIC
SBS	Chr12	2594989	C-T	Hetero	INTERGENIC
SBS	Chr12	7226041	G-A	Hetero	INTERGENIC
SBS	Chr12	7226543	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	20090	20091	1
Deletion	Chr10	2572647	2572648	1
Deletion	Chr9	8380656	8380658	2
Deletion	Chr7	10594908	10594911	3
Deletion	Chr11	12248067	12248069	2
Deletion	Chr11	12525467	12525468	1
Deletion	Chr6	15751284	15751285	1
Deletion	Chr12	22804097	22804099	2
Deletion	Chr4	23616135	23616138	3	OsKitaake04g148700
Deletion	Chr3	26174640	26174643	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	5873557	5973165
Inversion	Chr7	5873575	5973177
Inversion	Chr5	22150608	22548365	2
Inversion	Chr5	22150618	22548367	2
Inversion	Chr8	24429655	24630296	2
Inversion	Chr8	24429660	24630316	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes