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Mutant Information

Mutant Name	FN1075-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1075-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 55

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1909179 A-T Hetero INTRON
SBS Chr1 10264304 C-A Hetero INTERGENIC
SBS Chr1 11739794 C-G Homo INTERGENIC
SBS Chr1 16158893 C-G Homo NON_SYNONYMOUS_CODING OsKitaake01g174600
SBS Chr1 18316614 A-G Homo INTERGENIC
SBS Chr1 27284107 A-G Hetero INTERGENIC
SBS Chr1 33719149 C-T Hetero INTERGENIC
SBS Chr1 42161719 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake01g463400
SBS Chr1 43524012 G-A Homo INTRON
SBS Chr2 11702307 G-T Hetero INTERGENIC
SBS Chr2 20931818 G-A Hetero INTRON
SBS Chr2 21315271 T-C Hetero INTERGENIC
SBS Chr2 22635101 G-C Hetero INTERGENIC
SBS Chr2 25246308 C-T Hetero INTRON
SBS Chr2 35269936 G-T Hetero INTERGENIC
SBS Chr2 35809041 T-A Hetero INTERGENIC
SBS Chr3 5422763 A-G Hetero INTERGENIC
SBS Chr3 13232255 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake03g176800
SBS Chr3 19319515 G-A Homo INTERGENIC
SBS Chr3 21299171 G-A Hetero INTERGENIC
SBS Chr3 29178250 G-C Homo INTERGENIC
SBS Chr3 31253991 G-A Hetero INTERGENIC
SBS Chr4 26155785 A-T Hetero INTERGENIC
SBS Chr5 5492331 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake05g059501
SBS Chr5 8694285 G-A Hetero INTERGENIC
SBS Chr5 9414982 G-A Hetero INTERGENIC
SBS Chr5 11782138 C-G Hetero INTERGENIC
SBS Chr5 17813756 T-C Hetero INTERGENIC
SBS Chr5 20014888 T-G Hetero UTR_5_PRIME
SBS Chr6 1028946 T-C Homo INTERGENIC
SBS Chr6 10821947 T-A Hetero INTERGENIC
SBS Chr6 18349144 T-A Hetero INTERGENIC
SBS Chr6 21418638 G-T Homo INTERGENIC
SBS Chr6 26231016 T-A Hetero INTERGENIC
SBS Chr6 30686885 G-A Homo SYNONYMOUS_CODING
SBS Chr6 30761868 C-T Homo INTRON
SBS Chr7 304575 A-G Homo INTERGENIC
SBS Chr7 8029464 G-A Hetero INTERGENIC
SBS Chr7 8593451 T-C Hetero INTRON
SBS Chr7 26408128 G-A Hetero INTERGENIC
SBS Chr8 1291236 G-A Hetero INTERGENIC
SBS Chr8 8524931 C-A Hetero INTERGENIC
SBS Chr8 16838695 A-G Hetero INTERGENIC
SBS Chr9 618802 G-A Hetero INTERGENIC
SBS Chr9 813842 T-C Hetero INTERGENIC
SBS Chr9 9688242 A-G Hetero INTRON
SBS Chr9 11343637 C-T Hetero INTERGENIC
SBS Chr9 15504517 G-C Homo UTR_5_PRIME
SBS Chr10 4156543 T-G Homo INTERGENIC
SBS Chr10 22286570 C-T Homo UTR_3_PRIME
SBS Chr11 252599 T-A Hetero INTERGENIC
SBS Chr11 2634781 A-G Homo INTERGENIC
SBS Chr11 5967188 G-A Homo INTERGENIC
SBS Chr11 11003407 A-T Hetero INTERGENIC
SBS Chr12 8015014 G-T Homo INTERGENIC

Deletions: 20

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 22561 22562 1
Deletion Chr6 94070 94071 1
Deletion Chr9 4628911 4629084 173
Deletion Chr10 5350083 5350090 7
Deletion Chr11 6410897 6410920 23
Deletion Chr6 6653001 6698000 44999 5
Deletion Chr12 9544969 9544970 1 OsKitaake12g092200
Deletion Chr4 13228001 13285000 56999 4
Deletion Chr6 14237001 14361000 123999 4
Deletion Chr5 16425001 16477000 51999 3
Deletion Chr1 17749742 17749744 2
Deletion Chr9 17835261 17835271 10 OsKitaake09g135600
Deletion Chr12 17967758 17967777 19
Deletion Chr1 18633001 18735000 101999 7
Deletion Chr11 20452347 20452351 4
Deletion Chr10 22846077 22846082 5
Deletion Chr5 26023576 26023578 2
Deletion Chr5 30223346 30223347 1
Deletion Chr1 32802157 32802163 6
Deletion Chr1 33270698 33270700 2

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 24639269 24639272 2
Insertion Chr10 23539072 23539075 2
Insertion Chr12 753268 753271 2
Insertion Chr12 11689040 11689042 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 3737525 3838637 OsKitaake12g053000
Inversion Chr12 3737535 3838639 OsKitaake12g053000

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 16836594 Chr5 29661127
Translocation Chr6 16836903 Chr5 29796138

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1909179	A-T	Hetero	INTRON
SBS	Chr1	10264304	C-A	Hetero	INTERGENIC
SBS	Chr1	11739794	C-G	Homo	INTERGENIC
SBS	Chr1	16158893	C-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g174600
SBS	Chr1	18316614	A-G	Homo	INTERGENIC
SBS	Chr1	27284107	A-G	Hetero	INTERGENIC
SBS	Chr1	33719149	C-T	Hetero	INTERGENIC
SBS	Chr1	42161719	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g463400
SBS	Chr1	43524012	G-A	Homo	INTRON
SBS	Chr2	11702307	G-T	Hetero	INTERGENIC
SBS	Chr2	20931818	G-A	Hetero	INTRON
SBS	Chr2	21315271	T-C	Hetero	INTERGENIC
SBS	Chr2	22635101	G-C	Hetero	INTERGENIC
SBS	Chr2	25246308	C-T	Hetero	INTRON
SBS	Chr2	35269936	G-T	Hetero	INTERGENIC
SBS	Chr2	35809041	T-A	Hetero	INTERGENIC
SBS	Chr3	5422763	A-G	Hetero	INTERGENIC
SBS	Chr3	13232255	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g176800
SBS	Chr3	19319515	G-A	Homo	INTERGENIC
SBS	Chr3	21299171	G-A	Hetero	INTERGENIC
SBS	Chr3	29178250	G-C	Homo	INTERGENIC
SBS	Chr3	31253991	G-A	Hetero	INTERGENIC
SBS	Chr4	26155785	A-T	Hetero	INTERGENIC
SBS	Chr5	5492331	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g059501
SBS	Chr5	8694285	G-A	Hetero	INTERGENIC
SBS	Chr5	9414982	G-A	Hetero	INTERGENIC
SBS	Chr5	11782138	C-G	Hetero	INTERGENIC
SBS	Chr5	17813756	T-C	Hetero	INTERGENIC
SBS	Chr5	20014888	T-G	Hetero	UTR_5_PRIME
SBS	Chr6	1028946	T-C	Homo	INTERGENIC
SBS	Chr6	10821947	T-A	Hetero	INTERGENIC
SBS	Chr6	18349144	T-A	Hetero	INTERGENIC
SBS	Chr6	21418638	G-T	Homo	INTERGENIC
SBS	Chr6	26231016	T-A	Hetero	INTERGENIC
SBS	Chr6	30686885	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr6	30761868	C-T	Homo	INTRON
SBS	Chr7	304575	A-G	Homo	INTERGENIC
SBS	Chr7	8029464	G-A	Hetero	INTERGENIC
SBS	Chr7	8593451	T-C	Hetero	INTRON
SBS	Chr7	26408128	G-A	Hetero	INTERGENIC
SBS	Chr8	1291236	G-A	Hetero	INTERGENIC
SBS	Chr8	8524931	C-A	Hetero	INTERGENIC
SBS	Chr8	16838695	A-G	Hetero	INTERGENIC
SBS	Chr9	618802	G-A	Hetero	INTERGENIC
SBS	Chr9	813842	T-C	Hetero	INTERGENIC
SBS	Chr9	9688242	A-G	Hetero	INTRON
SBS	Chr9	11343637	C-T	Hetero	INTERGENIC
SBS	Chr9	15504517	G-C	Homo	UTR_5_PRIME
SBS	Chr10	4156543	T-G	Homo	INTERGENIC
SBS	Chr10	22286570	C-T	Homo	UTR_3_PRIME
SBS	Chr11	252599	T-A	Hetero	INTERGENIC
SBS	Chr11	2634781	A-G	Homo	INTERGENIC
SBS	Chr11	5967188	G-A	Homo	INTERGENIC
SBS	Chr11	11003407	A-T	Hetero	INTERGENIC
SBS	Chr12	8015014	G-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	22561	22562	1
Deletion	Chr6	94070	94071	1
Deletion	Chr9	4628911	4629084	173
Deletion	Chr10	5350083	5350090	7
Deletion	Chr11	6410897	6410920	23
Deletion	Chr6	6653001	6698000	44999	5
Deletion	Chr12	9544969	9544970	1	OsKitaake12g092200
Deletion	Chr4	13228001	13285000	56999	4
Deletion	Chr6	14237001	14361000	123999	4
Deletion	Chr5	16425001	16477000	51999	3
Deletion	Chr1	17749742	17749744	2
Deletion	Chr9	17835261	17835271	10	OsKitaake09g135600
Deletion	Chr12	17967758	17967777	19
Deletion	Chr1	18633001	18735000	101999	7
Deletion	Chr11	20452347	20452351	4
Deletion	Chr10	22846077	22846082	5
Deletion	Chr5	26023576	26023578	2
Deletion	Chr5	30223346	30223347	1
Deletion	Chr1	32802157	32802163	6
Deletion	Chr1	33270698	33270700	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	3737525	3838637	OsKitaake12g053000
Inversion	Chr12	3737535	3838639	OsKitaake12g053000

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes