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| Mutant Information |
|---|
| Mutant Name | FN1079-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1079-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 26
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 5639476 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 6514572 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 17707326 | A-C | Hetero | INTRON | |
| SBS | Chr1 | 40958513 | G-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 32192197 | C-A | Homo | START_GAINED | |
| SBS | Chr2 | 32980521 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 27320282 | C-T | Homo | UTR_5_PRIME | |
| SBS | Chr3 | 35861244 | A-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 686489 | G-A | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr4 | 9610562 | A-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 28320906 | G-A | Homo | INTERGENIC | |
| SBS | Chr5 | 4595530 | C-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake05g053300 |
| SBS | Chr5 | 26394675 | T-C | Homo | INTRON | |
| SBS | Chr7 | 1822441 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 14503926 | G-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 25675028 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 25955562 | T-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 27585481 | T-A | Hetero | INTRON | |
| SBS | Chr8 | 1384129 | T-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 19086692 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 21008588 | C-T | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr9 | 13589413 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 16541497 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 5890914 | C-A | Homo | INTERGENIC | |
| SBS | Chr10 | 18699353 | T-C | Homo | INTRON | |
| SBS | Chr11 | 19072925 | A-G | Homo | INTRON |
Deletions: 11
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr8 | 2019001 | 2027000 | 7999 | OsKitaake08g023600 |
| Deletion | Chr9 | 4731932 | 4731933 | 1 | |
| Deletion | Chr8 | 4979658 | 4979659 | 1 | |
| Deletion | Chr2 | 7031950 | 7031952 | 2 | |
| Deletion | Chr1 | 10406554 | 10406557 | 3 | |
| Deletion | Chr2 | 12361826 | 12361844 | 18 | |
| Deletion | Chr9 | 12562618 | 12562628 | 10 | |
| Deletion | Chr11 | 25784258 | 25784260 | 2 | |
| Deletion | Chr1 | 26996416 | 26996420 | 4 | |
| Deletion | Chr5 | 30167792 | 30167793 | 1 | |
| Deletion | Chr5 | 30237084 | 30237437 | 353 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr12 | 24827213 | 24827216 | 2 |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr12 | 3328214 | 3868399 | OsKitaake12g047400 |
| Inversion | Chr12 | 3328219 | 3868398 | OsKitaake12g047400 |
| Inversion | Chr7 | 18924771 | 19614682 | OsKitaake07g159600 |
| Inversion | Chr7 | 18924792 | 19614704 | OsKitaake07g159600 |