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Mutant Information

Mutant Name	FN1080-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1080-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 42

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5678880 C-T Hetero INTERGENIC
SBS Chr1 12375443 A-G Hetero INTERGENIC
SBS Chr1 17325502 T-G Hetero INTERGENIC
SBS Chr1 23448304 T-A Hetero INTERGENIC
SBS Chr2 6236914 C-T Hetero INTERGENIC
SBS Chr2 8984797 A-G Hetero INTERGENIC
SBS Chr2 20935633 G-C Hetero INTERGENIC
SBS Chr2 24148466 A-T Hetero INTRON
SBS Chr2 25977167 G-A Hetero INTERGENIC
SBS Chr3 1041688 T-C Hetero INTRON
SBS Chr3 1041708 A-T Hetero INTRON
SBS Chr3 10389591 T-A Hetero INTRON
SBS Chr3 21890290 G-A Hetero INTERGENIC
SBS Chr3 22234823 A-C Hetero INTERGENIC
SBS Chr3 25065704 C-T Hetero INTERGENIC
SBS Chr3 30023222 T-G Hetero INTERGENIC
SBS Chr4 1510782 C-T Hetero INTERGENIC
SBS Chr4 9508471 G-A Hetero INTERGENIC
SBS Chr4 10703787 C-A Hetero INTERGENIC
SBS Chr4 30061478 G-A Hetero INTERGENIC
SBS Chr4 34465000 G-T Homo INTERGENIC
SBS Chr5 11188387 G-A Homo INTERGENIC
SBS Chr5 25837064 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake05g227600
SBS Chr6 14435292 C-T Hetero INTERGENIC
SBS Chr6 17800081 T-A Hetero INTERGENIC
SBS Chr6 27159212 C-A Homo INTERGENIC
SBS Chr6 27159213 C-A Homo INTERGENIC
SBS Chr7 5158970 C-A Homo INTRON
SBS Chr7 13542738 T-A Homo INTERGENIC
SBS Chr7 19535054 C-G Homo INTRON
SBS Chr7 25913170 A-G Hetero INTERGENIC
SBS Chr7 26838127 A-G Hetero INTERGENIC
SBS Chr8 4174675 C-T Hetero INTERGENIC
SBS Chr8 12341493 C-T Hetero INTERGENIC
SBS Chr9 1787646 C-T Hetero INTERGENIC
SBS Chr9 20847762 T-A Hetero INTERGENIC
SBS Chr9 22148159 G-T Hetero INTERGENIC
SBS Chr10 12733521 A-T Hetero INTERGENIC
SBS Chr11 13238594 A-G Homo INTERGENIC
SBS Chr11 21722701 C-T Hetero INTERGENIC
SBS Chr12 2150160 C-T Hetero INTERGENIC
SBS Chr12 3916681 A-C Hetero INTERGENIC

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 2385993 2385995 2
Deletion Chr11 11376476 11376477 1
Deletion Chr3 12933504 12933511 7
Deletion Chr4 16837110 16837112 2
Deletion Chr7 19476001 19483000 6999 OsKitaake07g158200
Deletion Chr7 19535007 19535009 2
Deletion Chr11 20138634 20138731 97
Deletion Chr7 24542001 24549000 6999 OsKitaake07g218700
Deletion Chr11 28965688 28965691 3

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 26000645 26000649 3
Insertion Chr8 22832745 22832747 1

Inversions: 7

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 14078144 14189385 OsKitaake05g108700
Inversion Chr5 18045564 18313625 OsKitaake05g140300
Inversion Chr5 18045591 18314136 OsKitaake05g140300
Inversion Chr5 18313831 18800643
Inversion Chr5 18314127 18800642
Inversion Chr5 26584522 26590924
Inversion Chr5 26590849 26591490

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 8468493 Chr5 25536516
Translocation Chr9 8468508 Chr4 34149564
Translocation Chr8 10384864 Chr3 8226761 2
Translocation Chr5 25535534 Chr4 34149578

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5678880	C-T	Hetero	INTERGENIC
SBS	Chr1	12375443	A-G	Hetero	INTERGENIC
SBS	Chr1	17325502	T-G	Hetero	INTERGENIC
SBS	Chr1	23448304	T-A	Hetero	INTERGENIC
SBS	Chr2	6236914	C-T	Hetero	INTERGENIC
SBS	Chr2	8984797	A-G	Hetero	INTERGENIC
SBS	Chr2	20935633	G-C	Hetero	INTERGENIC
SBS	Chr2	24148466	A-T	Hetero	INTRON
SBS	Chr2	25977167	G-A	Hetero	INTERGENIC
SBS	Chr3	1041688	T-C	Hetero	INTRON
SBS	Chr3	1041708	A-T	Hetero	INTRON
SBS	Chr3	10389591	T-A	Hetero	INTRON
SBS	Chr3	21890290	G-A	Hetero	INTERGENIC
SBS	Chr3	22234823	A-C	Hetero	INTERGENIC
SBS	Chr3	25065704	C-T	Hetero	INTERGENIC
SBS	Chr3	30023222	T-G	Hetero	INTERGENIC
SBS	Chr4	1510782	C-T	Hetero	INTERGENIC
SBS	Chr4	9508471	G-A	Hetero	INTERGENIC
SBS	Chr4	10703787	C-A	Hetero	INTERGENIC
SBS	Chr4	30061478	G-A	Hetero	INTERGENIC
SBS	Chr4	34465000	G-T	Homo	INTERGENIC
SBS	Chr5	11188387	G-A	Homo	INTERGENIC
SBS	Chr5	25837064	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g227600
SBS	Chr6	14435292	C-T	Hetero	INTERGENIC
SBS	Chr6	17800081	T-A	Hetero	INTERGENIC
SBS	Chr6	27159212	C-A	Homo	INTERGENIC
SBS	Chr6	27159213	C-A	Homo	INTERGENIC
SBS	Chr7	5158970	C-A	Homo	INTRON
SBS	Chr7	13542738	T-A	Homo	INTERGENIC
SBS	Chr7	19535054	C-G	Homo	INTRON
SBS	Chr7	25913170	A-G	Hetero	INTERGENIC
SBS	Chr7	26838127	A-G	Hetero	INTERGENIC
SBS	Chr8	4174675	C-T	Hetero	INTERGENIC
SBS	Chr8	12341493	C-T	Hetero	INTERGENIC
SBS	Chr9	1787646	C-T	Hetero	INTERGENIC
SBS	Chr9	20847762	T-A	Hetero	INTERGENIC
SBS	Chr9	22148159	G-T	Hetero	INTERGENIC
SBS	Chr10	12733521	A-T	Hetero	INTERGENIC
SBS	Chr11	13238594	A-G	Homo	INTERGENIC
SBS	Chr11	21722701	C-T	Hetero	INTERGENIC
SBS	Chr12	2150160	C-T	Hetero	INTERGENIC
SBS	Chr12	3916681	A-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	2385993	2385995	2
Deletion	Chr11	11376476	11376477	1
Deletion	Chr3	12933504	12933511	7
Deletion	Chr4	16837110	16837112	2
Deletion	Chr7	19476001	19483000	6999	OsKitaake07g158200
Deletion	Chr7	19535007	19535009	2
Deletion	Chr11	20138634	20138731	97
Deletion	Chr7	24542001	24549000	6999	OsKitaake07g218700
Deletion	Chr11	28965688	28965691	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	14078144	14189385	OsKitaake05g108700
Inversion	Chr5	18045564	18313625	OsKitaake05g140300
Inversion	Chr5	18045591	18314136	OsKitaake05g140300
Inversion	Chr5	18313831	18800643
Inversion	Chr5	18314127	18800642
Inversion	Chr5	26584522	26590924
Inversion	Chr5	26590849	26591490

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes