Search Kitaake

Mutant Information

Mutant Name	FN1082-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1082-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 29

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 10546636 G-C Hetero INTERGENIC
SBS Chr1 19782854 C-A Hetero INTERGENIC
SBS Chr1 20437118 A-T Hetero INTERGENIC
SBS Chr1 27090427 G-A Hetero INTRON
SBS Chr1 30132957 G-A Hetero INTERGENIC
SBS Chr1 32553688 G-C Homo INTERGENIC
SBS Chr1 36144860 G-A Hetero INTERGENIC
SBS Chr2 14306014 C-A Hetero INTERGENIC
SBS Chr2 20130269 C-T Homo INTERGENIC
SBS Chr2 27273180 A-G Homo INTERGENIC
SBS Chr2 29447200 T-C Homo NON_SYNONYMOUS_CODING OsKitaake02g296450
SBS Chr2 36312012 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g384200
SBS Chr2 36312014 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake02g384200
SBS Chr2 36312015 A-T Hetero SYNONYMOUS_CODING
SBS Chr2 36829330 G-A Hetero INTERGENIC
SBS Chr3 8600999 C-T Hetero INTERGENIC
SBS Chr3 29696124 G-C Homo NON_SYNONYMOUS_CODING OsKitaake03g310100
SBS Chr3 37745197 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g424100
SBS Chr4 6874665 T-C Homo INTERGENIC
SBS Chr5 26902378 A-G Hetero INTRON
SBS Chr6 3444444 A-T Homo INTRON
SBS Chr6 5723597 C-T Homo NON_SYNONYMOUS_CODING OsKitaake06g075100
SBS Chr6 24901301 C-G Hetero INTERGENIC
SBS Chr8 2695329 C-T Hetero INTERGENIC
SBS Chr9 17383916 C-A Homo INTRON
SBS Chr10 10097746 T-A Hetero INTERGENIC
SBS Chr10 21248857 T-C Hetero INTERGENIC
SBS Chr11 18288585 G-C Hetero INTERGENIC
SBS Chr11 22412055 C-T Homo INTRON

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 2060221 2060228 7
Deletion Chr11 3157813 3157814 1
Deletion Chr3 6041306 6041309 3 OsKitaake03g086700
Deletion Chr9 7048101 7048105 4
Deletion Chr7 10991356 10991360 4 OsKitaake07g104100
Deletion Chr5 11789805 11789807 2
Deletion Chr5 12044399 12044404 5
Deletion Chr11 12456290 12456291 1
Deletion Chr9 14052745 14052746 1
Deletion Chr10 15939590 15939593 3 OsKitaake10g104700
Deletion Chr8 21213656 21213659 3
Deletion Chr7 22588681 22588749 68
Deletion Chr1 32415511 32415516 5
Deletion Chr4 34017027 34017033 6 OsKitaake04g283900

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 35301521 35301524 2
Insertion Chr5 5376534 5376538 3
Insertion Chr8 24400035 24400037 1
Insertion Chr12 3612286 3612291 4
Insertion Chr5 13240544 13240547 2

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 9519144 9852409

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10546636	G-C	Hetero	INTERGENIC
SBS	Chr1	19782854	C-A	Hetero	INTERGENIC
SBS	Chr1	20437118	A-T	Hetero	INTERGENIC
SBS	Chr1	27090427	G-A	Hetero	INTRON
SBS	Chr1	30132957	G-A	Hetero	INTERGENIC
SBS	Chr1	32553688	G-C	Homo	INTERGENIC
SBS	Chr1	36144860	G-A	Hetero	INTERGENIC
SBS	Chr2	14306014	C-A	Hetero	INTERGENIC
SBS	Chr2	20130269	C-T	Homo	INTERGENIC
SBS	Chr2	27273180	A-G	Homo	INTERGENIC
SBS	Chr2	29447200	T-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g296450
SBS	Chr2	36312012	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g384200
SBS	Chr2	36312014	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g384200
SBS	Chr2	36312015	A-T	Hetero	SYNONYMOUS_CODING
SBS	Chr2	36829330	G-A	Hetero	INTERGENIC
SBS	Chr3	8600999	C-T	Hetero	INTERGENIC
SBS	Chr3	29696124	G-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g310100
SBS	Chr3	37745197	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g424100
SBS	Chr4	6874665	T-C	Homo	INTERGENIC
SBS	Chr5	26902378	A-G	Hetero	INTRON
SBS	Chr6	3444444	A-T	Homo	INTRON
SBS	Chr6	5723597	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g075100
SBS	Chr6	24901301	C-G	Hetero	INTERGENIC
SBS	Chr8	2695329	C-T	Hetero	INTERGENIC
SBS	Chr9	17383916	C-A	Homo	INTRON
SBS	Chr10	10097746	T-A	Hetero	INTERGENIC
SBS	Chr10	21248857	T-C	Hetero	INTERGENIC
SBS	Chr11	18288585	G-C	Hetero	INTERGENIC
SBS	Chr11	22412055	C-T	Homo	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	2060221	2060228	7
Deletion	Chr11	3157813	3157814	1
Deletion	Chr3	6041306	6041309	3	OsKitaake03g086700
Deletion	Chr9	7048101	7048105	4
Deletion	Chr7	10991356	10991360	4	OsKitaake07g104100
Deletion	Chr5	11789805	11789807	2
Deletion	Chr5	12044399	12044404	5
Deletion	Chr11	12456290	12456291	1
Deletion	Chr9	14052745	14052746	1
Deletion	Chr10	15939590	15939593	3	OsKitaake10g104700
Deletion	Chr8	21213656	21213659	3
Deletion	Chr7	22588681	22588749	68
Deletion	Chr1	32415511	32415516	5
Deletion	Chr4	34017027	34017033	6	OsKitaake04g283900

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	9519144	9852409

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes