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Mutant Information

Mutant Name	FN1086-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1086-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 44

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3644125 G-T Hetero INTERGENIC
SBS Chr1 3644128 A-G Hetero INTERGENIC
SBS Chr1 5246545 T-C Hetero INTERGENIC
SBS Chr1 5354114 T-A Hetero INTERGENIC
SBS Chr1 5750196 T-A Hetero INTERGENIC
SBS Chr1 10295714 T-A Homo INTERGENIC
SBS Chr1 10789372 T-G Homo INTERGENIC
SBS Chr1 18870990 T-A Homo INTERGENIC
SBS Chr1 26217451 C-T Homo INTERGENIC
SBS Chr1 33160543 T-C Hetero INTRON
SBS Chr1 40023114 T-C Hetero INTERGENIC
SBS Chr2 20554977 G-T Hetero INTERGENIC
SBS Chr2 24708306 T-C Homo INTERGENIC
SBS Chr3 278708 G-A Hetero INTERGENIC
SBS Chr3 16853483 C-T Hetero INTERGENIC
SBS Chr3 23087143 G-A Hetero INTERGENIC
SBS Chr4 15774545 A-G Hetero INTERGENIC
SBS Chr4 34901981 G-A Homo INTRON
SBS Chr5 2495054 G-A Hetero INTERGENIC
SBS Chr5 2495113 A-G Hetero INTERGENIC
SBS Chr5 4434022 G-C Hetero INTERGENIC
SBS Chr5 5449889 G-A Hetero INTERGENIC
SBS Chr5 17702932 C-T Hetero INTERGENIC
SBS Chr6 6634778 A-G Hetero INTERGENIC
SBS Chr6 7713758 A-G Homo INTERGENIC
SBS Chr6 11281361 G-A Hetero INTERGENIC
SBS Chr6 14294148 G-A Hetero INTERGENIC
SBS Chr6 15870176 T-A Hetero INTERGENIC
SBS Chr6 19711409 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake06g177000
SBS Chr7 14687360 A-C Homo INTERGENIC
SBS Chr8 9881182 A-G Hetero INTERGENIC
SBS Chr8 12429207 G-A Hetero INTERGENIC
SBS Chr8 14767856 A-C Hetero INTERGENIC
SBS Chr9 17117833 A-T Homo INTRON
SBS Chr9 17788484 A-C Homo INTERGENIC
SBS Chr10 2787385 G-A Hetero INTERGENIC
SBS Chr10 13084037 C-G Hetero INTERGENIC
SBS Chr10 15911381 A-T Hetero INTERGENIC
SBS Chr10 17699153 G-C Hetero INTERGENIC
SBS Chr11 1282769 C-T Hetero INTERGENIC
SBS Chr11 13651853 G-A Hetero INTERGENIC
SBS Chr11 19500743 A-G Homo INTERGENIC
SBS Chr12 10342620 T-A Homo INTERGENIC
SBS Chr12 23082260 G-A Homo INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 3865525 3865527 2
Deletion Chr1 3891005 3891007 2
Deletion Chr1 5803424 5803426 2
Deletion Chr4 7170460 7170463 3
Deletion Chr5 7961881 7961882 1
Deletion Chr9 8999632 8999637 5
Deletion Chr12 9309535 9309537 2
Deletion Chr10 12834913 12834915 2
Deletion Chr9 17834150 17834151 1 OsKitaake09g135500
Deletion Chr3 18810001 19056000 245999 18
Deletion Chr6 22279929 22279936 7
Deletion Chr3 34041269 34041271 2

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 13087880 13087883 2
Insertion Chr4 34866232 34866235 2
Insertion Chr4 34934393 34934396 2
Insertion Chr6 3314139 3314142 2
Insertion Chr10 13926300 13926303 2

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 9309891 9709576
Inversion Chr4 21437476 21621403 OsKitaake04g119900
Inversion Chr4 21437483 21621410 2

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr4 1882621 Chr2 29418215
Translocation Chr4 21437483 Chr3 19053788 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3644125	G-T	Hetero	INTERGENIC
SBS	Chr1	3644128	A-G	Hetero	INTERGENIC
SBS	Chr1	5246545	T-C	Hetero	INTERGENIC
SBS	Chr1	5354114	T-A	Hetero	INTERGENIC
SBS	Chr1	5750196	T-A	Hetero	INTERGENIC
SBS	Chr1	10295714	T-A	Homo	INTERGENIC
SBS	Chr1	10789372	T-G	Homo	INTERGENIC
SBS	Chr1	18870990	T-A	Homo	INTERGENIC
SBS	Chr1	26217451	C-T	Homo	INTERGENIC
SBS	Chr1	33160543	T-C	Hetero	INTRON
SBS	Chr1	40023114	T-C	Hetero	INTERGENIC
SBS	Chr2	20554977	G-T	Hetero	INTERGENIC
SBS	Chr2	24708306	T-C	Homo	INTERGENIC
SBS	Chr3	278708	G-A	Hetero	INTERGENIC
SBS	Chr3	16853483	C-T	Hetero	INTERGENIC
SBS	Chr3	23087143	G-A	Hetero	INTERGENIC
SBS	Chr4	15774545	A-G	Hetero	INTERGENIC
SBS	Chr4	34901981	G-A	Homo	INTRON
SBS	Chr5	2495054	G-A	Hetero	INTERGENIC
SBS	Chr5	2495113	A-G	Hetero	INTERGENIC
SBS	Chr5	4434022	G-C	Hetero	INTERGENIC
SBS	Chr5	5449889	G-A	Hetero	INTERGENIC
SBS	Chr5	17702932	C-T	Hetero	INTERGENIC
SBS	Chr6	6634778	A-G	Hetero	INTERGENIC
SBS	Chr6	7713758	A-G	Homo	INTERGENIC
SBS	Chr6	11281361	G-A	Hetero	INTERGENIC
SBS	Chr6	14294148	G-A	Hetero	INTERGENIC
SBS	Chr6	15870176	T-A	Hetero	INTERGENIC
SBS	Chr6	19711409	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g177000
SBS	Chr7	14687360	A-C	Homo	INTERGENIC
SBS	Chr8	9881182	A-G	Hetero	INTERGENIC
SBS	Chr8	12429207	G-A	Hetero	INTERGENIC
SBS	Chr8	14767856	A-C	Hetero	INTERGENIC
SBS	Chr9	17117833	A-T	Homo	INTRON
SBS	Chr9	17788484	A-C	Homo	INTERGENIC
SBS	Chr10	2787385	G-A	Hetero	INTERGENIC
SBS	Chr10	13084037	C-G	Hetero	INTERGENIC
SBS	Chr10	15911381	A-T	Hetero	INTERGENIC
SBS	Chr10	17699153	G-C	Hetero	INTERGENIC
SBS	Chr11	1282769	C-T	Hetero	INTERGENIC
SBS	Chr11	13651853	G-A	Hetero	INTERGENIC
SBS	Chr11	19500743	A-G	Homo	INTERGENIC
SBS	Chr12	10342620	T-A	Homo	INTERGENIC
SBS	Chr12	23082260	G-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	3865525	3865527	2
Deletion	Chr1	3891005	3891007	2
Deletion	Chr1	5803424	5803426	2
Deletion	Chr4	7170460	7170463	3
Deletion	Chr5	7961881	7961882	1
Deletion	Chr9	8999632	8999637	5
Deletion	Chr12	9309535	9309537	2
Deletion	Chr10	12834913	12834915	2
Deletion	Chr9	17834150	17834151	1	OsKitaake09g135500
Deletion	Chr3	18810001	19056000	245999	18
Deletion	Chr6	22279929	22279936	7
Deletion	Chr3	34041269	34041271	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	9309891	9709576
Inversion	Chr4	21437476	21621403	OsKitaake04g119900
Inversion	Chr4	21437483	21621410	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes