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Mutant Information

Mutant Name	FN1089-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1089-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 45

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 7252549 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g090900
SBS Chr1 14832356 C-T Hetero INTERGENIC
SBS Chr1 17361982 G-A Hetero INTERGENIC
SBS Chr1 20627189 G-T Hetero SYNONYMOUS_CODING
SBS Chr1 21251200 G-T Hetero INTERGENIC
SBS Chr2 7301078 T-C Hetero INTERGENIC
SBS Chr2 11476635 C-T Homo INTERGENIC
SBS Chr2 23331122 T-C Hetero INTRON
SBS Chr2 23649711 C-G Hetero INTERGENIC
SBS Chr2 31284343 T-A Hetero INTRON
SBS Chr3 2864225 C-T Hetero INTERGENIC
SBS Chr3 3884019 A-G Hetero INTERGENIC
SBS Chr3 11518872 C-T Hetero INTERGENIC
SBS Chr3 29757988 T-C Hetero INTERGENIC
SBS Chr4 739475 G-A Hetero INTERGENIC
SBS Chr4 20051419 C-T Homo INTRON
SBS Chr4 21869983 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake04g126200
SBS Chr4 27595500 C-T Hetero INTERGENIC
SBS Chr5 5105922 C-T Hetero INTERGENIC
SBS Chr5 5912017 A-G Hetero INTERGENIC
SBS Chr5 20421967 T-A Hetero INTERGENIC
SBS Chr6 8608333 C-T Hetero INTERGENIC
SBS Chr6 10837219 C-T Homo INTERGENIC
SBS Chr6 19836266 G-A Hetero INTERGENIC
SBS Chr6 25377354 G-A Hetero INTERGENIC
SBS Chr6 28879766 C-G Hetero UTR_3_PRIME
SBS Chr7 16548208 T-A Homo INTERGENIC
SBS Chr7 18625661 G-T Homo INTERGENIC
SBS Chr7 22473193 C-T Hetero INTERGENIC
SBS Chr7 26784666 G-A Homo INTERGENIC
SBS Chr8 5992353 T-G Hetero INTERGENIC
SBS Chr8 26917410 C-T Hetero INTERGENIC
SBS Chr9 7476871 C-T Hetero INTERGENIC
SBS Chr9 10284700 G-A Hetero INTRON
SBS Chr9 14091313 A-T Hetero INTERGENIC
SBS Chr10 11685840 A-C Homo INTERGENIC
SBS Chr10 21673761 C-T Hetero INTERGENIC
SBS Chr11 18648915 A-G Hetero INTRON
SBS Chr11 26324647 G-A Hetero INTERGENIC
SBS Chr11 27776901 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake11g226700
SBS Chr12 4509997 C-T Homo INTERGENIC
SBS Chr12 13856532 T-A Homo INTERGENIC
SBS Chr12 18573017 G-A Hetero UTR_3_PRIME
SBS Chr12 20483052 T-C Hetero INTERGENIC
SBS Chr12 24120725 G-A Homo INTRON

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 1531397 1531398 1
Deletion Chr6 2175424 2175430 6
Deletion Chr12 4610025 4610037 12 OsKitaake12g061000
Deletion Chr7 9116119 9116132 13
Deletion Chr11 11961585 11961596 11
Deletion Chr1 21211143 21211151 8
Deletion Chr12 24224676 24224680 4
Deletion Chr11 25854001 26156000 301999 32
Deletion Chr3 28080001 28116000 35999 4
Deletion Chr11 28985003 28985005 2

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 10034482 10034485 2

Inversions: 7

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 5939511 6688182 2
Inversion Chr3 5939514 6688250 2
Inversion Chr1 9067877 9890872 OsKitaake01g116600
Inversion Chr9 9639040 10391828
Inversion Chr9 10391855 10403794 OsKitaake09g064700
Inversion Chr6 14736744 14796824
Inversion Chr6 14736752 14796829

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7252549	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g090900
SBS	Chr1	14832356	C-T	Hetero	INTERGENIC
SBS	Chr1	17361982	G-A	Hetero	INTERGENIC
SBS	Chr1	20627189	G-T	Hetero	SYNONYMOUS_CODING
SBS	Chr1	21251200	G-T	Hetero	INTERGENIC
SBS	Chr2	7301078	T-C	Hetero	INTERGENIC
SBS	Chr2	11476635	C-T	Homo	INTERGENIC
SBS	Chr2	23331122	T-C	Hetero	INTRON
SBS	Chr2	23649711	C-G	Hetero	INTERGENIC
SBS	Chr2	31284343	T-A	Hetero	INTRON
SBS	Chr3	2864225	C-T	Hetero	INTERGENIC
SBS	Chr3	3884019	A-G	Hetero	INTERGENIC
SBS	Chr3	11518872	C-T	Hetero	INTERGENIC
SBS	Chr3	29757988	T-C	Hetero	INTERGENIC
SBS	Chr4	739475	G-A	Hetero	INTERGENIC
SBS	Chr4	20051419	C-T	Homo	INTRON
SBS	Chr4	21869983	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g126200
SBS	Chr4	27595500	C-T	Hetero	INTERGENIC
SBS	Chr5	5105922	C-T	Hetero	INTERGENIC
SBS	Chr5	5912017	A-G	Hetero	INTERGENIC
SBS	Chr5	20421967	T-A	Hetero	INTERGENIC
SBS	Chr6	8608333	C-T	Hetero	INTERGENIC
SBS	Chr6	10837219	C-T	Homo	INTERGENIC
SBS	Chr6	19836266	G-A	Hetero	INTERGENIC
SBS	Chr6	25377354	G-A	Hetero	INTERGENIC
SBS	Chr6	28879766	C-G	Hetero	UTR_3_PRIME
SBS	Chr7	16548208	T-A	Homo	INTERGENIC
SBS	Chr7	18625661	G-T	Homo	INTERGENIC
SBS	Chr7	22473193	C-T	Hetero	INTERGENIC
SBS	Chr7	26784666	G-A	Homo	INTERGENIC
SBS	Chr8	5992353	T-G	Hetero	INTERGENIC
SBS	Chr8	26917410	C-T	Hetero	INTERGENIC
SBS	Chr9	7476871	C-T	Hetero	INTERGENIC
SBS	Chr9	10284700	G-A	Hetero	INTRON
SBS	Chr9	14091313	A-T	Hetero	INTERGENIC
SBS	Chr10	11685840	A-C	Homo	INTERGENIC
SBS	Chr10	21673761	C-T	Hetero	INTERGENIC
SBS	Chr11	18648915	A-G	Hetero	INTRON
SBS	Chr11	26324647	G-A	Hetero	INTERGENIC
SBS	Chr11	27776901	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g226700
SBS	Chr12	4509997	C-T	Homo	INTERGENIC
SBS	Chr12	13856532	T-A	Homo	INTERGENIC
SBS	Chr12	18573017	G-A	Hetero	UTR_3_PRIME
SBS	Chr12	20483052	T-C	Hetero	INTERGENIC
SBS	Chr12	24120725	G-A	Homo	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	1531397	1531398	1
Deletion	Chr6	2175424	2175430	6
Deletion	Chr12	4610025	4610037	12	OsKitaake12g061000
Deletion	Chr7	9116119	9116132	13
Deletion	Chr11	11961585	11961596	11
Deletion	Chr1	21211143	21211151	8
Deletion	Chr12	24224676	24224680	4
Deletion	Chr11	25854001	26156000	301999	32
Deletion	Chr3	28080001	28116000	35999	4
Deletion	Chr11	28985003	28985005	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	5939511	6688182	2
Inversion	Chr3	5939514	6688250	2
Inversion	Chr1	9067877	9890872	OsKitaake01g116600
Inversion	Chr9	9639040	10391828
Inversion	Chr9	10391855	10403794	OsKitaake09g064700
Inversion	Chr6	14736744	14796824
Inversion	Chr6	14736752	14796829

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes