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Mutant Information

Mutant Name	FN1093-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1093-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 47

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 18333850 G-A Hetero INTERGENIC
SBS Chr1 30444867 C-T Hetero INTERGENIC
SBS Chr1 36703563 A-G Hetero INTERGENIC
SBS Chr1 39290780 A-G Hetero INTRON
SBS Chr2 21767739 G-T Hetero INTERGENIC
SBS Chr2 22545002 T-C Homo INTERGENIC
SBS Chr2 24980807 C-T Hetero INTERGENIC
SBS Chr2 29292738 C-A Homo INTRON
SBS Chr2 30389725 T-C Homo INTERGENIC
SBS Chr2 33340769 A-T Hetero INTERGENIC
SBS Chr3 2847042 G-A Hetero INTERGENIC
SBS Chr3 2928573 C-T Hetero INTERGENIC
SBS Chr3 26720886 G-A Homo INTERGENIC
SBS Chr3 30050969 G-A Homo INTERGENIC
SBS Chr3 30713959 G-T Hetero INTERGENIC
SBS Chr3 32941311 G-T Homo INTERGENIC
SBS Chr5 2764240 C-A Homo INTERGENIC
SBS Chr5 12152179 C-T Homo INTERGENIC
SBS Chr5 20715663 C-T Hetero INTERGENIC
SBS Chr5 26368346 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake05g233000
SBS Chr6 294958 G-A Hetero UTR_5_PRIME
SBS Chr6 5164816 C-T Hetero INTRON
SBS Chr6 7100758 C-T Homo INTERGENIC
SBS Chr6 7545004 G-A Hetero INTERGENIC
SBS Chr6 10535065 A-G Homo INTRON
SBS Chr7 6165486 C-G Hetero INTERGENIC
SBS Chr7 12808811 G-A Hetero INTERGENIC
SBS Chr7 18295446 T-A Hetero INTERGENIC
SBS Chr8 1852226 C-T Hetero INTERGENIC
SBS Chr8 6596927 C-T Hetero INTERGENIC
SBS Chr8 9401287 C-T Hetero INTERGENIC
SBS Chr8 10681992 G-A Hetero INTERGENIC
SBS Chr8 19404422 C-T Homo INTERGENIC
SBS Chr8 21528478 C-A Homo INTERGENIC
SBS Chr9 3986787 G-A Homo SYNONYMOUS_CODING
SBS Chr9 5613852 G-C Homo INTERGENIC
SBS Chr9 7943908 C-T Homo INTERGENIC
SBS Chr10 11307757 A-T Hetero INTERGENIC
SBS Chr10 11307758 C-T Hetero INTERGENIC
SBS Chr10 12101327 A-T Homo INTERGENIC
SBS Chr11 723288 C-T Homo INTERGENIC
SBS Chr11 2994886 T-A Hetero INTRON
SBS Chr11 10985560 T-C Hetero INTERGENIC
SBS Chr11 24694359 A-T Hetero INTERGENIC
SBS Chr12 3460462 G-A Hetero UTR_3_PRIME
SBS Chr12 6092134 A-T Homo INTERGENIC
SBS Chr12 6898908 T-C Homo INTRON

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 234743 234746 3
Deletion Chr11 1432324 1432346 22
Deletion Chr11 1647487 1647496 9 OsKitaake11g021900
Deletion Chr6 2964001 2988000 23999 2
Deletion Chr5 4004509 4004520 11
Deletion Chr5 5877013 5877014 1
Deletion Chr7 7422331 7422333 2
Deletion Chr7 8301454 8301456 2
Deletion Chr9 16169053 16169054 1 OsKitaake09g116200
Deletion Chr7 18152152 18152154 2
Deletion Chr4 22158335 22158337 2
Deletion Chr12 23565179 23565181 2
Deletion Chr8 26592122 26592123 1

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 4499896 4499899 2
Insertion Chr3 14519147 14519150 2
Insertion Chr3 26898319 26898323 3
Insertion Chr7 25619427 25619432 4
Insertion Chr8 3379517 3379520 2
Insertion Chr5 30226856 30226864 7
Insertion Chr6 446 448 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 8795823 8842768
Inversion Chr11 8795826 8842767

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	18333850	G-A	Hetero	INTERGENIC
SBS	Chr1	30444867	C-T	Hetero	INTERGENIC
SBS	Chr1	36703563	A-G	Hetero	INTERGENIC
SBS	Chr1	39290780	A-G	Hetero	INTRON
SBS	Chr2	21767739	G-T	Hetero	INTERGENIC
SBS	Chr2	22545002	T-C	Homo	INTERGENIC
SBS	Chr2	24980807	C-T	Hetero	INTERGENIC
SBS	Chr2	29292738	C-A	Homo	INTRON
SBS	Chr2	30389725	T-C	Homo	INTERGENIC
SBS	Chr2	33340769	A-T	Hetero	INTERGENIC
SBS	Chr3	2847042	G-A	Hetero	INTERGENIC
SBS	Chr3	2928573	C-T	Hetero	INTERGENIC
SBS	Chr3	26720886	G-A	Homo	INTERGENIC
SBS	Chr3	30050969	G-A	Homo	INTERGENIC
SBS	Chr3	30713959	G-T	Hetero	INTERGENIC
SBS	Chr3	32941311	G-T	Homo	INTERGENIC
SBS	Chr5	2764240	C-A	Homo	INTERGENIC
SBS	Chr5	12152179	C-T	Homo	INTERGENIC
SBS	Chr5	20715663	C-T	Hetero	INTERGENIC
SBS	Chr5	26368346	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g233000
SBS	Chr6	294958	G-A	Hetero	UTR_5_PRIME
SBS	Chr6	5164816	C-T	Hetero	INTRON
SBS	Chr6	7100758	C-T	Homo	INTERGENIC
SBS	Chr6	7545004	G-A	Hetero	INTERGENIC
SBS	Chr6	10535065	A-G	Homo	INTRON
SBS	Chr7	6165486	C-G	Hetero	INTERGENIC
SBS	Chr7	12808811	G-A	Hetero	INTERGENIC
SBS	Chr7	18295446	T-A	Hetero	INTERGENIC
SBS	Chr8	1852226	C-T	Hetero	INTERGENIC
SBS	Chr8	6596927	C-T	Hetero	INTERGENIC
SBS	Chr8	9401287	C-T	Hetero	INTERGENIC
SBS	Chr8	10681992	G-A	Hetero	INTERGENIC
SBS	Chr8	19404422	C-T	Homo	INTERGENIC
SBS	Chr8	21528478	C-A	Homo	INTERGENIC
SBS	Chr9	3986787	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr9	5613852	G-C	Homo	INTERGENIC
SBS	Chr9	7943908	C-T	Homo	INTERGENIC
SBS	Chr10	11307757	A-T	Hetero	INTERGENIC
SBS	Chr10	11307758	C-T	Hetero	INTERGENIC
SBS	Chr10	12101327	A-T	Homo	INTERGENIC
SBS	Chr11	723288	C-T	Homo	INTERGENIC
SBS	Chr11	2994886	T-A	Hetero	INTRON
SBS	Chr11	10985560	T-C	Hetero	INTERGENIC
SBS	Chr11	24694359	A-T	Hetero	INTERGENIC
SBS	Chr12	3460462	G-A	Hetero	UTR_3_PRIME
SBS	Chr12	6092134	A-T	Homo	INTERGENIC
SBS	Chr12	6898908	T-C	Homo	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	234743	234746	3
Deletion	Chr11	1432324	1432346	22
Deletion	Chr11	1647487	1647496	9	OsKitaake11g021900
Deletion	Chr6	2964001	2988000	23999	2
Deletion	Chr5	4004509	4004520	11
Deletion	Chr5	5877013	5877014	1
Deletion	Chr7	7422331	7422333	2
Deletion	Chr7	8301454	8301456	2
Deletion	Chr9	16169053	16169054	1	OsKitaake09g116200
Deletion	Chr7	18152152	18152154	2
Deletion	Chr4	22158335	22158337	2
Deletion	Chr12	23565179	23565181	2
Deletion	Chr8	26592122	26592123	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	8795823	8842768
Inversion	Chr11	8795826	8842767

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes