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Mutant Information

Mutant Name	FN1094-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1094-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 49

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2100048 C-G Hetero INTERGENIC
SBS Chr1 2374625 T-C Hetero INTERGENIC
SBS Chr1 14784884 G-A Hetero INTERGENIC
SBS Chr1 15015963 A-G Hetero INTERGENIC
SBS Chr1 17386840 C-T Hetero INTERGENIC
SBS Chr1 23860084 A-G Hetero INTERGENIC
SBS Chr1 31063006 A-G Homo SYNONYMOUS_CODING
SBS Chr1 32738923 C-G Homo INTERGENIC
SBS Chr1 41215642 G-A Homo INTERGENIC
SBS Chr2 6238914 T-C Hetero INTERGENIC
SBS Chr2 7824367 T-C Hetero INTERGENIC
SBS Chr2 8777435 A-T Hetero INTERGENIC
SBS Chr2 11976369 C-T Homo INTRON
SBS Chr3 5731207 A-T Homo INTERGENIC
SBS Chr3 26733301 A-G Homo INTRON
SBS Chr4 487219 A-G Homo INTERGENIC
SBS Chr4 22076420 C-T Homo INTERGENIC
SBS Chr5 6061433 G-T Homo INTERGENIC
SBS Chr5 14901573 A-G Hetero INTERGENIC
SBS Chr5 15877768 T-A Hetero INTERGENIC
SBS Chr5 16658404 C-A Hetero INTERGENIC
SBS Chr5 19117308 T-A Hetero INTRON
SBS Chr5 19117309 G-A Hetero INTRON
SBS Chr5 21538052 T-G Homo NON_SYNONYMOUS_CODING OsKitaake05g175000
SBS Chr6 1173793 G-A Homo UTR_3_PRIME
SBS Chr6 25001215 G-A Hetero INTERGENIC
SBS Chr7 1904566 A-G Hetero UTR_3_PRIME
SBS Chr7 9598111 C-T Homo INTERGENIC
SBS Chr7 29051882 C-A Hetero INTERGENIC
SBS Chr8 13212919 C-T Hetero INTERGENIC
SBS Chr8 25469230 T-A Hetero INTERGENIC
SBS Chr8 25469231 C-A Hetero INTERGENIC
SBS Chr9 5125029 G-A Hetero INTERGENIC
SBS Chr9 8044028 A-C Hetero INTERGENIC
SBS Chr9 11067955 G-T Hetero INTERGENIC
SBS Chr9 22011268 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake09g196500
SBS Chr9 22036880 G-A Hetero SYNONYMOUS_CODING
SBS Chr10 2358503 A-G Hetero INTRON
SBS Chr10 2610308 C-T Homo INTRON
SBS Chr10 10626376 G-A Homo INTERGENIC
SBS Chr10 15527813 C-A Homo INTERGENIC
SBS Chr11 3124913 G-A Hetero INTERGENIC
SBS Chr11 4374504 G-A Hetero INTERGENIC
SBS Chr11 8534520 C-A Hetero INTERGENIC
SBS Chr11 8770654 G-A Hetero INTERGENIC
SBS Chr11 18053142 G-T Hetero INTERGENIC
SBS Chr11 21336716 A-G Hetero INTRON
SBS Chr12 4777481 A-T Hetero INTERGENIC
SBS Chr12 14650542 C-T Homo INTERGENIC

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 6269242 6269423 181
Deletion Chr10 6941220 6941230 10
Deletion Chr2 8564416 8564417 1
Deletion Chr2 8641744 8641746 2
Deletion Chr5 10229145 10229150 5
Deletion Chr9 11003267 11003268 1
Deletion Chr8 12807026 12807027 1
Deletion Chr1 13644121 13644122 1
Deletion Chr12 15184513 15184516 3
Deletion Chr10 17001453 17001454 1
Deletion Chr6 17973742 17973744 2
Deletion Chr6 19360513 19360518 5
Deletion Chr10 19472331 19472335 4 OsKitaake10g142800
Deletion Chr5 21930749 21930754 5
Deletion Chr11 23964356 23964357 1
Deletion Chr11 29020191 29020194 3
Deletion Chr4 34095761 34095763 2
Deletion Chr1 41750930 41750944 14 OsKitaake01g456400

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 25967012 25967016 3
Insertion Chr5 3398114 3398116 1
Insertion Chr5 7554753 7554755 1
Insertion Chr6 89620 89623 2

Inversions: 9

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 3974499 4541082
Inversion Chr3 3974501 4541082
Inversion Chr9 5521176 5532704
Inversion Chr9 5532767 5541867
Inversion Chr3 15206905 15211763
Inversion Chr3 15206928 15211778
Inversion Chr11 16360183 16788168
Inversion Chr11 16360194 16788171
Inversion Chr5 18485012 19112376 2

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 10895021 Chr3 17713055 OsKitaake07g103200
Translocation Chr7 10913214 Chr3 17713049
Translocation Chr5 18485050 Chr3 4823703 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2100048	C-G	Hetero	INTERGENIC
SBS	Chr1	2374625	T-C	Hetero	INTERGENIC
SBS	Chr1	14784884	G-A	Hetero	INTERGENIC
SBS	Chr1	15015963	A-G	Hetero	INTERGENIC
SBS	Chr1	17386840	C-T	Hetero	INTERGENIC
SBS	Chr1	23860084	A-G	Hetero	INTERGENIC
SBS	Chr1	31063006	A-G	Homo	SYNONYMOUS_CODING
SBS	Chr1	32738923	C-G	Homo	INTERGENIC
SBS	Chr1	41215642	G-A	Homo	INTERGENIC
SBS	Chr2	6238914	T-C	Hetero	INTERGENIC
SBS	Chr2	7824367	T-C	Hetero	INTERGENIC
SBS	Chr2	8777435	A-T	Hetero	INTERGENIC
SBS	Chr2	11976369	C-T	Homo	INTRON
SBS	Chr3	5731207	A-T	Homo	INTERGENIC
SBS	Chr3	26733301	A-G	Homo	INTRON
SBS	Chr4	487219	A-G	Homo	INTERGENIC
SBS	Chr4	22076420	C-T	Homo	INTERGENIC
SBS	Chr5	6061433	G-T	Homo	INTERGENIC
SBS	Chr5	14901573	A-G	Hetero	INTERGENIC
SBS	Chr5	15877768	T-A	Hetero	INTERGENIC
SBS	Chr5	16658404	C-A	Hetero	INTERGENIC
SBS	Chr5	19117308	T-A	Hetero	INTRON
SBS	Chr5	19117309	G-A	Hetero	INTRON
SBS	Chr5	21538052	T-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake05g175000
SBS	Chr6	1173793	G-A	Homo	UTR_3_PRIME
SBS	Chr6	25001215	G-A	Hetero	INTERGENIC
SBS	Chr7	1904566	A-G	Hetero	UTR_3_PRIME
SBS	Chr7	9598111	C-T	Homo	INTERGENIC
SBS	Chr7	29051882	C-A	Hetero	INTERGENIC
SBS	Chr8	13212919	C-T	Hetero	INTERGENIC
SBS	Chr8	25469230	T-A	Hetero	INTERGENIC
SBS	Chr8	25469231	C-A	Hetero	INTERGENIC
SBS	Chr9	5125029	G-A	Hetero	INTERGENIC
SBS	Chr9	8044028	A-C	Hetero	INTERGENIC
SBS	Chr9	11067955	G-T	Hetero	INTERGENIC
SBS	Chr9	22011268	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g196500
SBS	Chr9	22036880	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr10	2358503	A-G	Hetero	INTRON
SBS	Chr10	2610308	C-T	Homo	INTRON
SBS	Chr10	10626376	G-A	Homo	INTERGENIC
SBS	Chr10	15527813	C-A	Homo	INTERGENIC
SBS	Chr11	3124913	G-A	Hetero	INTERGENIC
SBS	Chr11	4374504	G-A	Hetero	INTERGENIC
SBS	Chr11	8534520	C-A	Hetero	INTERGENIC
SBS	Chr11	8770654	G-A	Hetero	INTERGENIC
SBS	Chr11	18053142	G-T	Hetero	INTERGENIC
SBS	Chr11	21336716	A-G	Hetero	INTRON
SBS	Chr12	4777481	A-T	Hetero	INTERGENIC
SBS	Chr12	14650542	C-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	6269242	6269423	181
Deletion	Chr10	6941220	6941230	10
Deletion	Chr2	8564416	8564417	1
Deletion	Chr2	8641744	8641746	2
Deletion	Chr5	10229145	10229150	5
Deletion	Chr9	11003267	11003268	1
Deletion	Chr8	12807026	12807027	1
Deletion	Chr1	13644121	13644122	1
Deletion	Chr12	15184513	15184516	3
Deletion	Chr10	17001453	17001454	1
Deletion	Chr6	17973742	17973744	2
Deletion	Chr6	19360513	19360518	5
Deletion	Chr10	19472331	19472335	4	OsKitaake10g142800
Deletion	Chr5	21930749	21930754	5
Deletion	Chr11	23964356	23964357	1
Deletion	Chr11	29020191	29020194	3
Deletion	Chr4	34095761	34095763	2
Deletion	Chr1	41750930	41750944	14	OsKitaake01g456400

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	3974499	4541082
Inversion	Chr3	3974501	4541082
Inversion	Chr9	5521176	5532704
Inversion	Chr9	5532767	5541867
Inversion	Chr3	15206905	15211763
Inversion	Chr3	15206928	15211778
Inversion	Chr11	16360183	16788168
Inversion	Chr11	16360194	16788171
Inversion	Chr5	18485012	19112376	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes