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Mutant Information

Mutant Name	FN1096-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1096-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 27

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 21206382 G-A Hetero INTERGENIC
SBS Chr2 6723202 T-G Hetero INTERGENIC
SBS Chr3 5153076 G-T Hetero INTERGENIC
SBS Chr3 23950363 C-A Homo UTR_3_PRIME
SBS Chr3 32573338 C-A Hetero INTERGENIC
SBS Chr3 36734005 T-C Hetero INTRON
SBS Chr4 1374357 C-A Hetero INTERGENIC
SBS Chr4 4569990 G-A Hetero INTERGENIC
SBS Chr4 24799631 G-T Hetero INTERGENIC
SBS Chr4 29307841 G-A Hetero INTERGENIC
SBS Chr4 36464168 A-T Hetero INTERGENIC
SBS Chr5 14567918 A-G Hetero INTERGENIC
SBS Chr5 18108585 C-T Homo INTERGENIC
SBS Chr5 27819884 C-T Homo NON_SYNONYMOUS_CODING OsKitaake05g255100
SBS Chr6 4536189 T-C Homo INTRON
SBS Chr7 7943885 C-T Homo INTERGENIC
SBS Chr7 8282925 G-T Homo INTERGENIC
SBS Chr7 12281328 C-A Homo INTERGENIC
SBS Chr7 25661798 G-C Hetero INTRON
SBS Chr8 510558 A-T Hetero INTERGENIC
SBS Chr8 510559 C-T Hetero INTERGENIC
SBS Chr8 1279044 T-A Hetero INTERGENIC
SBS Chr8 21990403 C-T Hetero INTERGENIC
SBS Chr9 7588885 C-T Homo INTERGENIC
SBS Chr10 8771655 G-A Hetero INTERGENIC
SBS Chr10 20307338 G-A Homo INTERGENIC
SBS Chr11 16775342 T-A Homo INTERGENIC

Deletions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 6754 7457 703
Deletion Chr10 4799992 4800009 17
Deletion Chr1 5713447 5713451 4
Deletion Chr9 11663001 11816000 152999 7
Deletion Chr3 20809259 20809264 5
Deletion Chr8 21043125 21043127 2
Deletion Chr1 36792049 36792051 2

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr8 28919530 28919533 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	21206382	G-A	Hetero	INTERGENIC
SBS	Chr2	6723202	T-G	Hetero	INTERGENIC
SBS	Chr3	5153076	G-T	Hetero	INTERGENIC
SBS	Chr3	23950363	C-A	Homo	UTR_3_PRIME
SBS	Chr3	32573338	C-A	Hetero	INTERGENIC
SBS	Chr3	36734005	T-C	Hetero	INTRON
SBS	Chr4	1374357	C-A	Hetero	INTERGENIC
SBS	Chr4	4569990	G-A	Hetero	INTERGENIC
SBS	Chr4	24799631	G-T	Hetero	INTERGENIC
SBS	Chr4	29307841	G-A	Hetero	INTERGENIC
SBS	Chr4	36464168	A-T	Hetero	INTERGENIC
SBS	Chr5	14567918	A-G	Hetero	INTERGENIC
SBS	Chr5	18108585	C-T	Homo	INTERGENIC
SBS	Chr5	27819884	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake05g255100
SBS	Chr6	4536189	T-C	Homo	INTRON
SBS	Chr7	7943885	C-T	Homo	INTERGENIC
SBS	Chr7	8282925	G-T	Homo	INTERGENIC
SBS	Chr7	12281328	C-A	Homo	INTERGENIC
SBS	Chr7	25661798	G-C	Hetero	INTRON
SBS	Chr8	510558	A-T	Hetero	INTERGENIC
SBS	Chr8	510559	C-T	Hetero	INTERGENIC
SBS	Chr8	1279044	T-A	Hetero	INTERGENIC
SBS	Chr8	21990403	C-T	Hetero	INTERGENIC
SBS	Chr9	7588885	C-T	Homo	INTERGENIC
SBS	Chr10	8771655	G-A	Hetero	INTERGENIC
SBS	Chr10	20307338	G-A	Homo	INTERGENIC
SBS	Chr11	16775342	T-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	6754	7457	703
Deletion	Chr10	4799992	4800009	17
Deletion	Chr1	5713447	5713451	4
Deletion	Chr9	11663001	11816000	152999	7
Deletion	Chr3	20809259	20809264	5
Deletion	Chr8	21043125	21043127	2
Deletion	Chr1	36792049	36792051	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes