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Mutant Information

Mutant Name	FN1097-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1097-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 100

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 6786947 G-A Hetero INTERGENIC
SBS Chr1 7694176 C-T Hetero INTERGENIC
SBS Chr1 15430693 T-A Hetero INTERGENIC
SBS Chr1 15879724 T-C Hetero INTERGENIC
SBS Chr1 24294038 G-A Homo INTERGENIC
SBS Chr1 30495933 A-T Hetero INTERGENIC
SBS Chr1 31723034 A-T Hetero UTR_5_PRIME
SBS Chr1 34157665 A-T Hetero INTRON
SBS Chr1 40239568 A-T Hetero INTERGENIC
SBS Chr1 40440945 A-T Hetero INTERGENIC
SBS Chr2 12660068 A-T Hetero INTERGENIC
SBS Chr2 15499709 G-T Hetero INTERGENIC
SBS Chr2 18473451 A-G Hetero INTERGENIC
SBS Chr2 21615799 A-T Hetero INTERGENIC
SBS Chr2 22953838 C-G Hetero INTERGENIC
SBS Chr2 24239724 A-T Hetero INTRON
SBS Chr2 31395341 C-T Hetero INTERGENIC
SBS Chr2 35542804 G-T Hetero INTRON
SBS Chr3 2147298 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake03g030600
SBS Chr3 4625787 C-T Hetero INTRON
SBS Chr3 6582365 A-T Hetero INTERGENIC
SBS Chr3 13057636 T-C Hetero INTERGENIC
SBS Chr3 22285191 G-A Hetero INTERGENIC
SBS Chr3 31317968 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g329600
SBS Chr3 32370517 G-T Hetero INTERGENIC
SBS Chr3 35195468 G-C Hetero INTERGENIC
SBS Chr4 1385064 G-A Hetero INTERGENIC
SBS Chr4 3322970 G-T Hetero INTERGENIC
SBS Chr4 6412906 G-T Hetero INTERGENIC
SBS Chr4 10262447 A-T Hetero INTERGENIC
SBS Chr4 12449046 G-T Homo INTERGENIC
SBS Chr4 12449047 G-T Homo INTERGENIC
SBS Chr4 12974576 G-A Hetero INTERGENIC
SBS Chr4 14139734 G-A Hetero INTERGENIC
SBS Chr4 17907876 A-G Hetero INTERGENIC
SBS Chr4 18338825 G-A Hetero INTERGENIC
SBS Chr4 22908380 A-T Hetero INTRON
SBS Chr4 33280226 T-C Hetero INTERGENIC
SBS Chr4 33716707 G-A Hetero INTRON
SBS Chr5 2454126 T-C Hetero INTERGENIC
SBS Chr5 5480348 C-A Hetero INTERGENIC
SBS Chr5 7566268 A-T Hetero INTERGENIC
SBS Chr5 10665978 T-A Hetero INTERGENIC
SBS Chr5 15857716 G-A Hetero INTERGENIC
SBS Chr5 24825469 A-T Hetero INTERGENIC
SBS Chr6 748819 T-C Hetero INTERGENIC
SBS Chr6 1068709 C-T Hetero INTERGENIC
SBS Chr6 2040183 T-C Homo NON_SYNONYMOUS_CODING OsKitaake06g025600
SBS Chr6 9896071 T-C Hetero INTERGENIC
SBS Chr6 10983945 C-T Homo INTERGENIC
SBS Chr6 14960152 A-G Hetero INTERGENIC
SBS Chr6 15581096 G-A Hetero INTERGENIC
SBS Chr6 16850079 G-T Hetero INTRON
SBS Chr6 29655950 C-A Hetero INTERGENIC
SBS Chr7 6946942 C-A Hetero INTERGENIC
SBS Chr7 9095390 A-T Hetero INTERGENIC
SBS Chr7 11851519 C-A Hetero INTERGENIC
SBS Chr7 13446824 A-C Homo INTERGENIC
SBS Chr7 19265725 A-T Homo INTERGENIC
SBS Chr7 20826231 C-A Homo INTERGENIC
SBS Chr7 27252435 T-A Hetero INTERGENIC
SBS Chr7 28545809 G-T Hetero UTR_5_PRIME
SBS Chr7 28810311 A-G Hetero INTERGENIC
SBS Chr8 4558393 A-T Hetero INTERGENIC
SBS Chr8 16367690 G-T Hetero INTERGENIC
SBS Chr8 17875933 A-T Hetero INTERGENIC
SBS Chr8 19104364 A-T Hetero INTERGENIC
SBS Chr8 22399819 A-T Hetero INTERGENIC
SBS Chr9 404577 A-G Hetero INTRON
SBS Chr9 1452966 A-G Hetero INTERGENIC
SBS Chr9 1594827 G-A Hetero INTERGENIC
SBS Chr9 8665206 A-G Hetero INTERGENIC
SBS Chr9 14331016 A-T Hetero INTERGENIC
SBS Chr9 14718040 G-A Hetero INTERGENIC
SBS Chr9 14848963 G-A Hetero INTERGENIC
SBS Chr9 16518320 A-C Hetero INTERGENIC
SBS Chr9 17015621 T-A Hetero INTERGENIC
SBS Chr10 959074 A-T Hetero INTERGENIC
SBS Chr10 5151671 G-T Hetero INTERGENIC
SBS Chr10 17410347 C-T Homo INTERGENIC
SBS Chr11 4566763 T-A Hetero INTERGENIC
SBS Chr11 11576985 A-G Hetero INTRON
SBS Chr11 12292284 T-A Hetero INTERGENIC
SBS Chr11 12589362 A-T Hetero INTERGENIC
SBS Chr11 19410482 T-A Hetero INTERGENIC
SBS Chr11 24128327 A-T Hetero INTRON
SBS Chr11 26555481 T-C Hetero INTERGENIC
SBS Chr12 3319506 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake12g047200
SBS Chr12 3319507 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake12g047200
SBS Chr12 5454834 T-C Hetero INTERGENIC
SBS Chr12 5585476 A-T Hetero INTERGENIC
SBS Chr12 9690779 A-T Hetero INTERGENIC
SBS Chr12 13562395 C-T Hetero INTERGENIC
SBS Chr12 13928675 A-T Hetero INTERGENIC
SBS Chr12 21458818 C-A Hetero INTERGENIC
SBS Chr12 21558311 C-A Hetero INTERGENIC
SBS Chr12 21895126 C-G Hetero INTERGENIC
SBS Chr12 24169108 G-T Homo UTR_3_PRIME
SBS Chr12 24737234 G-A Hetero INTERGENIC
SBS Chr12 27055543 G-A Homo INTERGENIC

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 8064547 8064548 1
Deletion Chr2 10155284 10155285 1 OsKitaake02g121901
Deletion Chr5 13474380 13474390 10
Deletion Chr3 16815861 16815868 7
Deletion Chr3 16922275 16922276 1
Deletion Chr11 17224622 17224624 2
Deletion Chr11 19320361 19320362 1
Deletion Chr1 22275798 22275799 1
Deletion Chr11 24811230 24811231 1

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 9520563 9520566 2
Insertion Chr6 228983 228985 1 OsKitaake06g001300
Insertion Chr7 23863974 23863977 2
Insertion Chr8 3620968 3620973 4
Insertion Chr2 13778278 13778280 1
Insertion Chr2 13865666 13865669 2

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 4819488 4820067 OsKitaake01g064208
Inversion Chr8 25359205 25615976 OsKitaake08g202600
Inversion Chr8 25360220 25615988 2

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr5 5922781 Chr3 31233840 OsKitaake03g328700
Translocation Chr5 5934062 Chr3 31233787 OsKitaake03g328700

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6786947	G-A	Hetero	INTERGENIC
SBS	Chr1	7694176	C-T	Hetero	INTERGENIC
SBS	Chr1	15430693	T-A	Hetero	INTERGENIC
SBS	Chr1	15879724	T-C	Hetero	INTERGENIC
SBS	Chr1	24294038	G-A	Homo	INTERGENIC
SBS	Chr1	30495933	A-T	Hetero	INTERGENIC
SBS	Chr1	31723034	A-T	Hetero	UTR_5_PRIME
SBS	Chr1	34157665	A-T	Hetero	INTRON
SBS	Chr1	40239568	A-T	Hetero	INTERGENIC
SBS	Chr1	40440945	A-T	Hetero	INTERGENIC
SBS	Chr2	12660068	A-T	Hetero	INTERGENIC
SBS	Chr2	15499709	G-T	Hetero	INTERGENIC
SBS	Chr2	18473451	A-G	Hetero	INTERGENIC
SBS	Chr2	21615799	A-T	Hetero	INTERGENIC
SBS	Chr2	22953838	C-G	Hetero	INTERGENIC
SBS	Chr2	24239724	A-T	Hetero	INTRON
SBS	Chr2	31395341	C-T	Hetero	INTERGENIC
SBS	Chr2	35542804	G-T	Hetero	INTRON
SBS	Chr3	2147298	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g030600
SBS	Chr3	4625787	C-T	Hetero	INTRON
SBS	Chr3	6582365	A-T	Hetero	INTERGENIC
SBS	Chr3	13057636	T-C	Hetero	INTERGENIC
SBS	Chr3	22285191	G-A	Hetero	INTERGENIC
SBS	Chr3	31317968	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g329600
SBS	Chr3	32370517	G-T	Hetero	INTERGENIC
SBS	Chr3	35195468	G-C	Hetero	INTERGENIC
SBS	Chr4	1385064	G-A	Hetero	INTERGENIC
SBS	Chr4	3322970	G-T	Hetero	INTERGENIC
SBS	Chr4	6412906	G-T	Hetero	INTERGENIC
SBS	Chr4	10262447	A-T	Hetero	INTERGENIC
SBS	Chr4	12449046	G-T	Homo	INTERGENIC
SBS	Chr4	12449047	G-T	Homo	INTERGENIC
SBS	Chr4	12974576	G-A	Hetero	INTERGENIC
SBS	Chr4	14139734	G-A	Hetero	INTERGENIC
SBS	Chr4	17907876	A-G	Hetero	INTERGENIC
SBS	Chr4	18338825	G-A	Hetero	INTERGENIC
SBS	Chr4	22908380	A-T	Hetero	INTRON
SBS	Chr4	33280226	T-C	Hetero	INTERGENIC
SBS	Chr4	33716707	G-A	Hetero	INTRON
SBS	Chr5	2454126	T-C	Hetero	INTERGENIC
SBS	Chr5	5480348	C-A	Hetero	INTERGENIC
SBS	Chr5	7566268	A-T	Hetero	INTERGENIC
SBS	Chr5	10665978	T-A	Hetero	INTERGENIC
SBS	Chr5	15857716	G-A	Hetero	INTERGENIC
SBS	Chr5	24825469	A-T	Hetero	INTERGENIC
SBS	Chr6	748819	T-C	Hetero	INTERGENIC
SBS	Chr6	1068709	C-T	Hetero	INTERGENIC
SBS	Chr6	2040183	T-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g025600
SBS	Chr6	9896071	T-C	Hetero	INTERGENIC
SBS	Chr6	10983945	C-T	Homo	INTERGENIC
SBS	Chr6	14960152	A-G	Hetero	INTERGENIC
SBS	Chr6	15581096	G-A	Hetero	INTERGENIC
SBS	Chr6	16850079	G-T	Hetero	INTRON
SBS	Chr6	29655950	C-A	Hetero	INTERGENIC
SBS	Chr7	6946942	C-A	Hetero	INTERGENIC
SBS	Chr7	9095390	A-T	Hetero	INTERGENIC
SBS	Chr7	11851519	C-A	Hetero	INTERGENIC
SBS	Chr7	13446824	A-C	Homo	INTERGENIC
SBS	Chr7	19265725	A-T	Homo	INTERGENIC
SBS	Chr7	20826231	C-A	Homo	INTERGENIC
SBS	Chr7	27252435	T-A	Hetero	INTERGENIC
SBS	Chr7	28545809	G-T	Hetero	UTR_5_PRIME
SBS	Chr7	28810311	A-G	Hetero	INTERGENIC
SBS	Chr8	4558393	A-T	Hetero	INTERGENIC
SBS	Chr8	16367690	G-T	Hetero	INTERGENIC
SBS	Chr8	17875933	A-T	Hetero	INTERGENIC
SBS	Chr8	19104364	A-T	Hetero	INTERGENIC
SBS	Chr8	22399819	A-T	Hetero	INTERGENIC
SBS	Chr9	404577	A-G	Hetero	INTRON
SBS	Chr9	1452966	A-G	Hetero	INTERGENIC
SBS	Chr9	1594827	G-A	Hetero	INTERGENIC
SBS	Chr9	8665206	A-G	Hetero	INTERGENIC
SBS	Chr9	14331016	A-T	Hetero	INTERGENIC
SBS	Chr9	14718040	G-A	Hetero	INTERGENIC
SBS	Chr9	14848963	G-A	Hetero	INTERGENIC
SBS	Chr9	16518320	A-C	Hetero	INTERGENIC
SBS	Chr9	17015621	T-A	Hetero	INTERGENIC
SBS	Chr10	959074	A-T	Hetero	INTERGENIC
SBS	Chr10	5151671	G-T	Hetero	INTERGENIC
SBS	Chr10	17410347	C-T	Homo	INTERGENIC
SBS	Chr11	4566763	T-A	Hetero	INTERGENIC
SBS	Chr11	11576985	A-G	Hetero	INTRON
SBS	Chr11	12292284	T-A	Hetero	INTERGENIC
SBS	Chr11	12589362	A-T	Hetero	INTERGENIC
SBS	Chr11	19410482	T-A	Hetero	INTERGENIC
SBS	Chr11	24128327	A-T	Hetero	INTRON
SBS	Chr11	26555481	T-C	Hetero	INTERGENIC
SBS	Chr12	3319506	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g047200
SBS	Chr12	3319507	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g047200
SBS	Chr12	5454834	T-C	Hetero	INTERGENIC
SBS	Chr12	5585476	A-T	Hetero	INTERGENIC
SBS	Chr12	9690779	A-T	Hetero	INTERGENIC
SBS	Chr12	13562395	C-T	Hetero	INTERGENIC
SBS	Chr12	13928675	A-T	Hetero	INTERGENIC
SBS	Chr12	21458818	C-A	Hetero	INTERGENIC
SBS	Chr12	21558311	C-A	Hetero	INTERGENIC
SBS	Chr12	21895126	C-G	Hetero	INTERGENIC
SBS	Chr12	24169108	G-T	Homo	UTR_3_PRIME
SBS	Chr12	24737234	G-A	Hetero	INTERGENIC
SBS	Chr12	27055543	G-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	8064547	8064548	1
Deletion	Chr2	10155284	10155285	1	OsKitaake02g121901
Deletion	Chr5	13474380	13474390	10
Deletion	Chr3	16815861	16815868	7
Deletion	Chr3	16922275	16922276	1
Deletion	Chr11	17224622	17224624	2
Deletion	Chr11	19320361	19320362	1
Deletion	Chr1	22275798	22275799	1
Deletion	Chr11	24811230	24811231	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	4819488	4820067	OsKitaake01g064208
Inversion	Chr8	25359205	25615976	OsKitaake08g202600
Inversion	Chr8	25360220	25615988	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes