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| Mutant Information |
|---|
| Mutant Name | FN1099-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1099-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 32
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 5577878 | C-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 10418766 | T-G | Homo | INTERGENIC | |
| SBS | Chr1 | 15350055 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 19917697 | C-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 32159082 | T-C | Homo | INTERGENIC | |
| SBS | Chr1 | 33232108 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 17448507 | C-A | Hetero | INTRON | |
| SBS | Chr2 | 19960617 | G-A | Hetero | UTR_3_PRIME | |
| SBS | Chr3 | 9712572 | G-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 15502586 | C-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 16396328 | T-C | Hetero | INTRON | |
| SBS | Chr3 | 28039228 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 6751611 | T-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 7854480 | T-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 14340960 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 34587747 | C-T | Hetero | INTRON | |
| SBS | Chr6 | 13471980 | C-A | Homo | INTERGENIC | |
| SBS | Chr6 | 23660388 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 13854876 | A-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 17544565 | C-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 18878075 | T-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 3377792 | A-G | Homo | INTERGENIC | |
| SBS | Chr8 | 4079884 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 28530608 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 6346228 | G-T | Homo | INTERGENIC | |
| SBS | Chr10 | 12189500 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 22695496 | C-G | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr11 | 2135943 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 12255405 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 6461096 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 10191880 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 19745054 | T-C | Hetero | INTERGENIC |
Deletions: 7
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr8 | 3624007 | 3624008 | 1 | |
| Deletion | Chr2 | 7480780 | 7480790 | 10 | |
| Deletion | Chr5 | 11926131 | 11926133 | 2 | |
| Deletion | Chr8 | 19159002 | 19159008 | 6 | |
| Deletion | Chr9 | 19193001 | 19235000 | 41999 | 10 |
| Deletion | Chr1 | 35058659 | 35058660 | 1 | |
| Deletion | Chr1 | 35351320 | 35351323 | 3 | OsKitaake01g372800 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr9 | 22636753 | 22636756 | 2 | |
| Insertion | Chr8 | 2510172 | 2510174 | 1 |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr5 | 25763740 | 25925366 | OsKitaake05g226400 |
| Inversion | Chr5 | 25764222 | 25925375 | OsKitaake05g226400 |
| Inversion | Chr4 | 27430246 | 27434468 | OsKitaake04g200366 |
| Inversion | Chr4 | 27430258 | 27434473 | OsKitaake04g200366 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr8 | 7961918 | Chr4 | 26378593 | OsKitaake04g188700 |
| Translocation | Chr8 | 7961922 | Chr4 | 26378944 | OsKitaake04g188700 |