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| Mutant Information |
|---|
| Mutant Name | FN1102-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1102-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 29
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 32978954 | A-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 40242799 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 40242804 | A-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 27898726 | G-A | Hetero | INTRON | |
| SBS | Chr2 | 28367640 | A-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 34435898 | G-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 36321065 | C-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake02g384500 |
| SBS | Chr3 | 9758751 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 21003952 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 27062035 | G-A | Homo | INTRON | |
| SBS | Chr3 | 29256975 | G-A | Homo | START_GAINED | |
| SBS | Chr4 | 14617291 | A-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 24226376 | T-A | Homo | UTR_5_PRIME | |
| SBS | Chr5 | 13306919 | C-T | Homo | UTR_3_PRIME | |
| SBS | Chr7 | 9187681 | C-G | Homo | INTERGENIC | |
| SBS | Chr7 | 12254799 | C-T | Homo | INTERGENIC | |
| SBS | Chr7 | 27795972 | G-A | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr8 | 2914247 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 3980512 | C-T | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr8 | 19609485 | T-C | Homo | INTRON | |
| SBS | Chr9 | 12003599 | C-T | Hetero | UTR_3_PRIME | |
| SBS | Chr9 | 15610825 | T-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 17318268 | G-C | Hetero | INTERGENIC | |
| SBS | Chr10 | 8883502 | A-C | Hetero | INTERGENIC | |
| SBS | Chr10 | 13497559 | T-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake10g081200 |
| SBS | Chr12 | 8244169 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 8254742 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 8254816 | G-C | Homo | INTERGENIC | |
| SBS | Chr12 | 8254826 | G-C | Homo | INTERGENIC |
Deletions: 16
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr6 | 107143 | 107144 | 1 | |
| Deletion | Chr2 | 1368109 | 1368120 | 11 | |
| Deletion | Chr7 | 4690666 | 4690685 | 19 | |
| Deletion | Chr6 | 6512932 | 6512933 | 1 | OsKitaake06g085100 |
| Deletion | Chr2 | 7424147 | 7424148 | 1 | |
| Deletion | Chr5 | 9706001 | 9713000 | 6999 | |
| Deletion | Chr7 | 17960188 | 17960189 | 1 | |
| Deletion | Chr7 | 21982767 | 21982768 | 1 | |
| Deletion | Chr6 | 24777001 | 24800000 | 22999 | 3 |
| Deletion | Chr2 | 25057569 | 25057571 | 2 | |
| Deletion | Chr7 | 25760584 | 25760585 | 1 | |
| Deletion | Chr6 | 27022492 | 27022499 | 7 | |
| Deletion | Chr8 | 27763898 | 27763906 | 8 | |
| Deletion | Chr11 | 29018302 | 29018309 | 7 | |
| Deletion | Chr4 | 34756945 | 34756947 | 2 | |
| Deletion | Chr1 | 41148124 | 41148126 | 2 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr4 | 6130926 | 6130929 | 2 | |
| Insertion | Chr7 | 19536450 | 19536453 | 2 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr6 | 24776859 | Chr3 | 26123343 | |
| Translocation | Chr6 | 24799669 | Chr3 | 26230157 |