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Mutant Information

Mutant Name	FN1103-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1103-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 45

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 65951 T-A Hetero INTERGENIC
SBS Chr1 13355794 G-A Hetero INTERGENIC
SBS Chr1 16811491 T-G Hetero INTRON
SBS Chr1 22369890 G-A Hetero INTERGENIC
SBS Chr1 23891270 G-A Hetero INTERGENIC
SBS Chr1 24820096 T-C Hetero INTERGENIC
SBS Chr1 24820098 T-C Hetero INTERGENIC
SBS Chr1 27838605 G-A Hetero INTERGENIC
SBS Chr1 35421633 C-T Hetero INTERGENIC
SBS Chr1 37271672 C-T Hetero INTERGENIC
SBS Chr1 40204259 A-T Hetero UTR_3_PRIME
SBS Chr2 1205852 T-C Hetero INTERGENIC
SBS Chr2 34195015 T-G Hetero INTERGENIC
SBS Chr2 34195247 G-A Hetero UTR_5_PRIME
SBS Chr3 2644080 C-A Hetero INTERGENIC
SBS Chr3 7582848 T-C Hetero INTERGENIC
SBS Chr3 12123615 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g164200
SBS Chr3 14764626 G-A Hetero INTERGENIC
SBS Chr3 16537831 C-G Hetero INTERGENIC
SBS Chr3 26569121 G-T Hetero INTERGENIC
SBS Chr3 34784782 C-T Hetero INTERGENIC
SBS Chr3 34784787 A-T Hetero INTERGENIC
SBS Chr3 37460158 C-T Hetero INTRON
SBS Chr4 14931489 A-G Hetero INTERGENIC
SBS Chr4 17172413 T-C Hetero INTERGENIC
SBS Chr4 22190957 C-T Hetero INTERGENIC
SBS Chr4 27534787 C-T Hetero INTERGENIC
SBS Chr5 10383157 C-T Hetero INTERGENIC
SBS Chr5 13487493 C-A Hetero INTERGENIC
SBS Chr7 3064038 G-C Hetero INTERGENIC
SBS Chr7 12330960 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake07g110100
SBS Chr7 26183503 G-A Hetero INTERGENIC
SBS Chr8 626097 A-C Homo INTERGENIC
SBS Chr9 2756745 G-A Hetero INTERGENIC
SBS Chr9 6909981 A-T Hetero INTERGENIC
SBS Chr9 10243971 A-T Hetero INTERGENIC
SBS Chr10 19973149 T-C Homo INTERGENIC
SBS Chr11 6826584 C-T Hetero INTERGENIC
SBS Chr11 7230671 C-T Homo INTERGENIC
SBS Chr11 18121106 G-A Homo INTERGENIC
SBS Chr11 21627968 T-A Hetero INTRON
SBS Chr12 5065930 G-A Homo INTERGENIC
SBS Chr12 12484881 A-T Hetero INTERGENIC
SBS Chr12 15089498 C-T Hetero INTERGENIC
SBS Chr12 19538481 T-A Hetero INTRON

Deletions: 20

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 2518111 2518119 8
Deletion Chr6 5126192 5126193 1
Deletion Chr7 7069809 7069811 2
Deletion Chr5 9001068 9001069 1
Deletion Chr6 13284771 13284775 4
Deletion Chr5 14878964 14878965 1
Deletion Chr8 17082379 17082381 2
Deletion Chr2 17703205 17703211 6
Deletion Chr1 20399653 20399655 2
Deletion Chr8 20683493 20683499 6
Deletion Chr9 21044354 21044356 2
Deletion Chr3 21682591 21682593 2
Deletion Chr9 21904764 21904765 1
Deletion Chr3 22452262 22452269 7 OsKitaake03g244200
Deletion Chr3 24760942 24760949 7
Deletion Chr11 25575322 25575323 1
Deletion Chr4 25671153 25671155 2
Deletion Chr2 30420382 30420386 4
Deletion Chr1 35912001 35937000 24999 2
Deletion Chr1 38357836 38357838 2

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr6 1587555 1587558 2
Insertion Chr6 4854492 4854495 2
Insertion Chr6 11517586 11517588 1
Insertion Chr7 2768573 2768576 2
Insertion Chr9 12154206 12154209 2
Insertion Chr7 11995366 11995368 1
Insertion Chr7 29596810 29596813 2

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 10199397 10335471
Inversion Chr11 10199410 10335477
Inversion Chr1 35634546 36048500

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr3 17539418 Chr2 25288865

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	65951	T-A	Hetero	INTERGENIC
SBS	Chr1	13355794	G-A	Hetero	INTERGENIC
SBS	Chr1	16811491	T-G	Hetero	INTRON
SBS	Chr1	22369890	G-A	Hetero	INTERGENIC
SBS	Chr1	23891270	G-A	Hetero	INTERGENIC
SBS	Chr1	24820096	T-C	Hetero	INTERGENIC
SBS	Chr1	24820098	T-C	Hetero	INTERGENIC
SBS	Chr1	27838605	G-A	Hetero	INTERGENIC
SBS	Chr1	35421633	C-T	Hetero	INTERGENIC
SBS	Chr1	37271672	C-T	Hetero	INTERGENIC
SBS	Chr1	40204259	A-T	Hetero	UTR_3_PRIME
SBS	Chr2	1205852	T-C	Hetero	INTERGENIC
SBS	Chr2	34195015	T-G	Hetero	INTERGENIC
SBS	Chr2	34195247	G-A	Hetero	UTR_5_PRIME
SBS	Chr3	2644080	C-A	Hetero	INTERGENIC
SBS	Chr3	7582848	T-C	Hetero	INTERGENIC
SBS	Chr3	12123615	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g164200
SBS	Chr3	14764626	G-A	Hetero	INTERGENIC
SBS	Chr3	16537831	C-G	Hetero	INTERGENIC
SBS	Chr3	26569121	G-T	Hetero	INTERGENIC
SBS	Chr3	34784782	C-T	Hetero	INTERGENIC
SBS	Chr3	34784787	A-T	Hetero	INTERGENIC
SBS	Chr3	37460158	C-T	Hetero	INTRON
SBS	Chr4	14931489	A-G	Hetero	INTERGENIC
SBS	Chr4	17172413	T-C	Hetero	INTERGENIC
SBS	Chr4	22190957	C-T	Hetero	INTERGENIC
SBS	Chr4	27534787	C-T	Hetero	INTERGENIC
SBS	Chr5	10383157	C-T	Hetero	INTERGENIC
SBS	Chr5	13487493	C-A	Hetero	INTERGENIC
SBS	Chr7	3064038	G-C	Hetero	INTERGENIC
SBS	Chr7	12330960	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g110100
SBS	Chr7	26183503	G-A	Hetero	INTERGENIC
SBS	Chr8	626097	A-C	Homo	INTERGENIC
SBS	Chr9	2756745	G-A	Hetero	INTERGENIC
SBS	Chr9	6909981	A-T	Hetero	INTERGENIC
SBS	Chr9	10243971	A-T	Hetero	INTERGENIC
SBS	Chr10	19973149	T-C	Homo	INTERGENIC
SBS	Chr11	6826584	C-T	Hetero	INTERGENIC
SBS	Chr11	7230671	C-T	Homo	INTERGENIC
SBS	Chr11	18121106	G-A	Homo	INTERGENIC
SBS	Chr11	21627968	T-A	Hetero	INTRON
SBS	Chr12	5065930	G-A	Homo	INTERGENIC
SBS	Chr12	12484881	A-T	Hetero	INTERGENIC
SBS	Chr12	15089498	C-T	Hetero	INTERGENIC
SBS	Chr12	19538481	T-A	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	2518111	2518119	8
Deletion	Chr6	5126192	5126193	1
Deletion	Chr7	7069809	7069811	2
Deletion	Chr5	9001068	9001069	1
Deletion	Chr6	13284771	13284775	4
Deletion	Chr5	14878964	14878965	1
Deletion	Chr8	17082379	17082381	2
Deletion	Chr2	17703205	17703211	6
Deletion	Chr1	20399653	20399655	2
Deletion	Chr8	20683493	20683499	6
Deletion	Chr9	21044354	21044356	2
Deletion	Chr3	21682591	21682593	2
Deletion	Chr9	21904764	21904765	1
Deletion	Chr3	22452262	22452269	7	OsKitaake03g244200
Deletion	Chr3	24760942	24760949	7
Deletion	Chr11	25575322	25575323	1
Deletion	Chr4	25671153	25671155	2
Deletion	Chr2	30420382	30420386	4
Deletion	Chr1	35912001	35937000	24999	2
Deletion	Chr1	38357836	38357838	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	10199397	10335471
Inversion	Chr11	10199410	10335477
Inversion	Chr1	35634546	36048500

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes