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Mutant Information

Mutant Name	FN1104-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1104-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 39

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 9899614 G-A Homo NON_SYNONYMOUS_CODING OsKitaake01g125500
SBS Chr1 38659462 A-T Hetero INTERGENIC
SBS Chr1 40783602 G-T Hetero INTRON
SBS Chr1 42077107 C-T Hetero INTERGENIC
SBS Chr2 10556516 A-T Hetero INTERGENIC
SBS Chr2 23723083 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g233100
SBS Chr2 29954349 A-G Hetero INTERGENIC
SBS Chr2 35328931 A-G Homo INTERGENIC
SBS Chr3 19727655 A-G Hetero INTERGENIC
SBS Chr3 31229819 C-T Hetero INTERGENIC
SBS Chr4 17582172 A-G Hetero INTERGENIC
SBS Chr4 24218633 A-G Homo INTERGENIC
SBS Chr4 32988749 G-A Hetero INTRON
SBS Chr5 16851247 A-T Hetero INTERGENIC
SBS Chr6 8827805 G-A Hetero INTERGENIC
SBS Chr7 9082960 G-A Homo INTERGENIC
SBS Chr7 14189914 C-T Homo INTERGENIC
SBS Chr7 16398437 C-A Hetero INTERGENIC
SBS Chr7 18924593 T-C Hetero INTERGENIC
SBS Chr7 19037345 C-T Hetero INTERGENIC
SBS Chr7 20035662 A-T Hetero INTERGENIC
SBS Chr7 22286342 G-T Homo INTERGENIC
SBS Chr7 22286343 A-T Homo INTERGENIC
SBS Chr8 6512923 G-C Hetero INTERGENIC
SBS Chr8 9023869 C-T Homo INTERGENIC
SBS Chr9 3621140 A-T Homo INTERGENIC
SBS Chr9 8904415 G-T Hetero INTERGENIC
SBS Chr10 552073 C-T Hetero INTERGENIC
SBS Chr10 1347380 G-A Hetero INTERGENIC
SBS Chr10 3625443 T-A Hetero INTERGENIC
SBS Chr10 3625444 T-A Hetero INTERGENIC
SBS Chr10 17712780 T-A Homo INTERGENIC
SBS Chr10 17712782 C-A Homo INTERGENIC
SBS Chr10 20156976 G-A Hetero INTERGENIC
SBS Chr11 14815376 T-A Hetero INTERGENIC
SBS Chr11 17340068 A-C Hetero INTERGENIC
SBS Chr11 19324542 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake11g150100
SBS Chr12 12267117 A-G Hetero INTERGENIC
SBS Chr12 12904460 T-G Hetero INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 3268384 3268388 4
Deletion Chr10 5487001 5521000 33999 OsKitaake10g038300
Deletion Chr3 6280035 6280155 120
Deletion Chr6 8879001 9067000 187999 19
Deletion Chr7 14030617 14030818 201 OsKitaake07g121100
Deletion Chr5 16344776 16344777 1 OsKitaake05g125200
Deletion Chr10 17713037 17713038 1
Deletion Chr3 18687001 18709000 21999 OsKitaake03g225500
Deletion Chr4 29716800 29716802 2
Deletion Chr1 33408886 33408889 3

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr8 10253150 10253153 2
Insertion Chr6 87853 87856 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9899614	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g125500
SBS	Chr1	38659462	A-T	Hetero	INTERGENIC
SBS	Chr1	40783602	G-T	Hetero	INTRON
SBS	Chr1	42077107	C-T	Hetero	INTERGENIC
SBS	Chr2	10556516	A-T	Hetero	INTERGENIC
SBS	Chr2	23723083	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g233100
SBS	Chr2	29954349	A-G	Hetero	INTERGENIC
SBS	Chr2	35328931	A-G	Homo	INTERGENIC
SBS	Chr3	19727655	A-G	Hetero	INTERGENIC
SBS	Chr3	31229819	C-T	Hetero	INTERGENIC
SBS	Chr4	17582172	A-G	Hetero	INTERGENIC
SBS	Chr4	24218633	A-G	Homo	INTERGENIC
SBS	Chr4	32988749	G-A	Hetero	INTRON
SBS	Chr5	16851247	A-T	Hetero	INTERGENIC
SBS	Chr6	8827805	G-A	Hetero	INTERGENIC
SBS	Chr7	9082960	G-A	Homo	INTERGENIC
SBS	Chr7	14189914	C-T	Homo	INTERGENIC
SBS	Chr7	16398437	C-A	Hetero	INTERGENIC
SBS	Chr7	18924593	T-C	Hetero	INTERGENIC
SBS	Chr7	19037345	C-T	Hetero	INTERGENIC
SBS	Chr7	20035662	A-T	Hetero	INTERGENIC
SBS	Chr7	22286342	G-T	Homo	INTERGENIC
SBS	Chr7	22286343	A-T	Homo	INTERGENIC
SBS	Chr8	6512923	G-C	Hetero	INTERGENIC
SBS	Chr8	9023869	C-T	Homo	INTERGENIC
SBS	Chr9	3621140	A-T	Homo	INTERGENIC
SBS	Chr9	8904415	G-T	Hetero	INTERGENIC
SBS	Chr10	552073	C-T	Hetero	INTERGENIC
SBS	Chr10	1347380	G-A	Hetero	INTERGENIC
SBS	Chr10	3625443	T-A	Hetero	INTERGENIC
SBS	Chr10	3625444	T-A	Hetero	INTERGENIC
SBS	Chr10	17712780	T-A	Homo	INTERGENIC
SBS	Chr10	17712782	C-A	Homo	INTERGENIC
SBS	Chr10	20156976	G-A	Hetero	INTERGENIC
SBS	Chr11	14815376	T-A	Hetero	INTERGENIC
SBS	Chr11	17340068	A-C	Hetero	INTERGENIC
SBS	Chr11	19324542	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g150100
SBS	Chr12	12267117	A-G	Hetero	INTERGENIC
SBS	Chr12	12904460	T-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	3268384	3268388	4
Deletion	Chr10	5487001	5521000	33999	OsKitaake10g038300
Deletion	Chr3	6280035	6280155	120
Deletion	Chr6	8879001	9067000	187999	19
Deletion	Chr7	14030617	14030818	201	OsKitaake07g121100
Deletion	Chr5	16344776	16344777	1	OsKitaake05g125200
Deletion	Chr10	17713037	17713038	1
Deletion	Chr3	18687001	18709000	21999	OsKitaake03g225500
Deletion	Chr4	29716800	29716802	2
Deletion	Chr1	33408886	33408889	3

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes