Search Kitaake

Mutant Information

Mutant Name	FN1106-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1106-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 50

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5578570 A-G Hetero INTERGENIC
SBS Chr1 6914927 T-C Hetero INTERGENIC
SBS Chr1 16695274 G-T Hetero INTERGENIC
SBS Chr1 16794960 A-T Hetero INTRON
SBS Chr1 40345127 C-T Hetero INTERGENIC
SBS Chr1 43730506 T-A Hetero INTERGENIC
SBS Chr2 3127231 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake02g044700
SBS Chr2 7469783 A-T Hetero INTERGENIC
SBS Chr2 7469784 C-A Hetero INTERGENIC
SBS Chr2 10176909 C-T Hetero INTERGENIC
SBS Chr2 29068838 C-T Hetero INTERGENIC
SBS Chr2 32713223 C-T Hetero INTERGENIC
SBS Chr3 630663 C-T Hetero INTERGENIC
SBS Chr3 8131306 G-A Hetero INTERGENIC
SBS Chr4 3676678 T-C Hetero INTERGENIC
SBS Chr4 5511641 G-C Homo INTERGENIC
SBS Chr4 9786283 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake04g051600
SBS Chr4 13484989 A-T Hetero INTRON
SBS Chr4 16377336 A-G Hetero INTERGENIC
SBS Chr4 20317227 C-T Hetero INTERGENIC
SBS Chr4 25280555 G-A Hetero INTERGENIC
SBS Chr5 9203237 G-T Hetero INTERGENIC
SBS Chr5 10514960 C-G Homo INTERGENIC
SBS Chr5 11011622 T-C Homo INTERGENIC
SBS Chr5 12449863 G-T Hetero INTERGENIC
SBS Chr5 21927518 C-T Hetero INTERGENIC
SBS Chr5 27807334 G-A Hetero INTERGENIC
SBS Chr6 14731803 C-T Homo INTERGENIC
SBS Chr6 15523630 C-G Homo INTERGENIC
SBS Chr6 17993663 C-T Hetero INTERGENIC
SBS Chr6 20532906 G-A Homo INTERGENIC
SBS Chr7 8571374 T-C Hetero INTERGENIC
SBS Chr7 8714440 G-T Hetero INTERGENIC
SBS Chr7 24758452 A-T Hetero INTERGENIC
SBS Chr7 27040143 A-C Hetero INTRON
SBS Chr8 18325774 T-G Homo INTERGENIC
SBS Chr9 6242894 A-G Hetero INTERGENIC
SBS Chr9 13042675 C-A Homo INTERGENIC
SBS Chr9 15829616 A-T Hetero INTERGENIC
SBS Chr10 2723776 G-A Hetero INTERGENIC
SBS Chr10 7512845 G-A Hetero INTERGENIC
SBS Chr10 13746450 A-C Hetero INTERGENIC
SBS Chr10 14494452 G-A Hetero INTERGENIC
SBS Chr10 15504202 G-A Hetero INTERGENIC
SBS Chr11 15071735 T-A Hetero INTERGENIC
SBS Chr11 15259952 T-C Hetero INTERGENIC
SBS Chr11 16839512 T-A Hetero INTERGENIC
SBS Chr11 16840715 G-A Hetero INTERGENIC
SBS Chr12 4041401 A-T Hetero INTRON
SBS Chr12 20866400 G-T Hetero INTERGENIC

Deletions: 24

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 2446277 2446282 5
Deletion Chr11 4113251 4113255 4
Deletion Chr3 5530207 5530212 5
Deletion Chr2 6297291 6297306 15
Deletion Chr11 7839597 7839598 1
Deletion Chr9 8486001 8940000 453999 18
Deletion Chr10 13392364 13392372 8
Deletion Chr5 15091714 15091719 5
Deletion Chr3 17358936 17359015 79
Deletion Chr5 17654306 17654311 5
Deletion Chr6 18093881 18093885 4
Deletion Chr8 18319684 18319690 6
Deletion Chr2 20630980 20630982 2
Deletion Chr10 21003337 21003339 2
Deletion Chr11 21506681 21506748 67
Deletion Chr11 22776600 22776612 12
Deletion Chr2 23267785 23267787 2
Deletion Chr12 23800989 23800990 1
Deletion Chr11 24342192 24342230 38
Deletion Chr12 24660550 24660565 15
Deletion Chr1 25163578 25163580 2
Deletion Chr8 25620498 25620500 2
Deletion Chr1 26000645 26000647 2 OsKitaake01g252800
Deletion Chr2 33898509 33898511 2 OsKitaake02g351300

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 28404876 28404879 2
Insertion Chr5 6531378 6531381 2
Insertion Chr6 10794752 10794754 1
Insertion Chr12 20146354 20146356 1 OsKitaake12g154800

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 15299909 Chr1 1514260

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5578570	A-G	Hetero	INTERGENIC
SBS	Chr1	6914927	T-C	Hetero	INTERGENIC
SBS	Chr1	16695274	G-T	Hetero	INTERGENIC
SBS	Chr1	16794960	A-T	Hetero	INTRON
SBS	Chr1	40345127	C-T	Hetero	INTERGENIC
SBS	Chr1	43730506	T-A	Hetero	INTERGENIC
SBS	Chr2	3127231	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g044700
SBS	Chr2	7469783	A-T	Hetero	INTERGENIC
SBS	Chr2	7469784	C-A	Hetero	INTERGENIC
SBS	Chr2	10176909	C-T	Hetero	INTERGENIC
SBS	Chr2	29068838	C-T	Hetero	INTERGENIC
SBS	Chr2	32713223	C-T	Hetero	INTERGENIC
SBS	Chr3	630663	C-T	Hetero	INTERGENIC
SBS	Chr3	8131306	G-A	Hetero	INTERGENIC
SBS	Chr4	3676678	T-C	Hetero	INTERGENIC
SBS	Chr4	5511641	G-C	Homo	INTERGENIC
SBS	Chr4	9786283	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g051600
SBS	Chr4	13484989	A-T	Hetero	INTRON
SBS	Chr4	16377336	A-G	Hetero	INTERGENIC
SBS	Chr4	20317227	C-T	Hetero	INTERGENIC
SBS	Chr4	25280555	G-A	Hetero	INTERGENIC
SBS	Chr5	9203237	G-T	Hetero	INTERGENIC
SBS	Chr5	10514960	C-G	Homo	INTERGENIC
SBS	Chr5	11011622	T-C	Homo	INTERGENIC
SBS	Chr5	12449863	G-T	Hetero	INTERGENIC
SBS	Chr5	21927518	C-T	Hetero	INTERGENIC
SBS	Chr5	27807334	G-A	Hetero	INTERGENIC
SBS	Chr6	14731803	C-T	Homo	INTERGENIC
SBS	Chr6	15523630	C-G	Homo	INTERGENIC
SBS	Chr6	17993663	C-T	Hetero	INTERGENIC
SBS	Chr6	20532906	G-A	Homo	INTERGENIC
SBS	Chr7	8571374	T-C	Hetero	INTERGENIC
SBS	Chr7	8714440	G-T	Hetero	INTERGENIC
SBS	Chr7	24758452	A-T	Hetero	INTERGENIC
SBS	Chr7	27040143	A-C	Hetero	INTRON
SBS	Chr8	18325774	T-G	Homo	INTERGENIC
SBS	Chr9	6242894	A-G	Hetero	INTERGENIC
SBS	Chr9	13042675	C-A	Homo	INTERGENIC
SBS	Chr9	15829616	A-T	Hetero	INTERGENIC
SBS	Chr10	2723776	G-A	Hetero	INTERGENIC
SBS	Chr10	7512845	G-A	Hetero	INTERGENIC
SBS	Chr10	13746450	A-C	Hetero	INTERGENIC
SBS	Chr10	14494452	G-A	Hetero	INTERGENIC
SBS	Chr10	15504202	G-A	Hetero	INTERGENIC
SBS	Chr11	15071735	T-A	Hetero	INTERGENIC
SBS	Chr11	15259952	T-C	Hetero	INTERGENIC
SBS	Chr11	16839512	T-A	Hetero	INTERGENIC
SBS	Chr11	16840715	G-A	Hetero	INTERGENIC
SBS	Chr12	4041401	A-T	Hetero	INTRON
SBS	Chr12	20866400	G-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	2446277	2446282	5
Deletion	Chr11	4113251	4113255	4
Deletion	Chr3	5530207	5530212	5
Deletion	Chr2	6297291	6297306	15
Deletion	Chr11	7839597	7839598	1
Deletion	Chr9	8486001	8940000	453999	18
Deletion	Chr10	13392364	13392372	8
Deletion	Chr5	15091714	15091719	5
Deletion	Chr3	17358936	17359015	79
Deletion	Chr5	17654306	17654311	5
Deletion	Chr6	18093881	18093885	4
Deletion	Chr8	18319684	18319690	6
Deletion	Chr2	20630980	20630982	2
Deletion	Chr10	21003337	21003339	2
Deletion	Chr11	21506681	21506748	67
Deletion	Chr11	22776600	22776612	12
Deletion	Chr2	23267785	23267787	2
Deletion	Chr12	23800989	23800990	1
Deletion	Chr11	24342192	24342230	38
Deletion	Chr12	24660550	24660565	15
Deletion	Chr1	25163578	25163580	2
Deletion	Chr8	25620498	25620500	2
Deletion	Chr1	26000645	26000647	2	OsKitaake01g252800
Deletion	Chr2	33898509	33898511	2	OsKitaake02g351300

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	15299909	Chr1	1514260

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes