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Mutant Information

Mutant Name	FN1108-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1108-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 47

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5161098 C-T Hetero INTERGENIC
SBS Chr1 9618529 T-G Homo NON_SYNONYMOUS_CODING OsKitaake01g123200
SBS Chr1 12177118 G-A Hetero INTERGENIC
SBS Chr1 15632902 C-T Hetero INTERGENIC
SBS Chr1 36459138 G-A Homo UTR_3_PRIME
SBS Chr1 38530600 C-T Homo INTERGENIC
SBS Chr1 43546968 C-A Homo INTRON
SBS Chr2 722222 C-A Homo INTERGENIC
SBS Chr2 11700045 G-A Hetero INTERGENIC
SBS Chr2 18864622 G-A Hetero INTERGENIC
SBS Chr2 24611063 C-T Hetero INTERGENIC
SBS Chr3 11970091 T-C Homo INTRON
SBS Chr3 14339132 A-G Hetero INTERGENIC
SBS Chr3 15285697 C-T Homo INTERGENIC
SBS Chr3 21877890 C-T Homo INTERGENIC
SBS Chr3 30084677 A-G Hetero INTERGENIC
SBS Chr4 3582145 C-G Hetero INTERGENIC
SBS Chr4 23607114 G-T Homo INTERGENIC
SBS Chr5 4924463 T-A Homo INTERGENIC
SBS Chr5 11168790 A-T Hetero INTERGENIC
SBS Chr5 13728885 C-T Hetero INTERGENIC
SBS Chr5 16432019 C-T Hetero INTERGENIC
SBS Chr5 18837292 C-T Homo INTERGENIC
SBS Chr6 11692410 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake06g127500
SBS Chr6 12962269 A-T Homo INTRON
SBS Chr6 15731463 T-C Homo INTERGENIC
SBS Chr7 10213946 A-T Hetero INTERGENIC
SBS Chr7 11183119 G-T Hetero INTERGENIC
SBS Chr7 13641086 C-T Hetero INTERGENIC
SBS Chr8 21023310 T-A Homo INTERGENIC
SBS Chr10 10556532 T-C Homo INTERGENIC
SBS Chr10 12235785 T-C Hetero UTR_3_PRIME
SBS Chr10 12890870 C-G Hetero INTERGENIC
SBS Chr10 14409212 T-C Hetero INTERGENIC
SBS Chr10 16194036 C-T Hetero INTERGENIC
SBS Chr11 440503 C-A Hetero INTERGENIC
SBS Chr11 6118754 A-C Hetero INTERGENIC
SBS Chr11 6576492 T-G Hetero INTERGENIC
SBS Chr11 9127035 T-C Hetero INTERGENIC
SBS Chr11 15383411 C-T Hetero INTERGENIC
SBS Chr11 25459685 G-A Homo INTERGENIC
SBS Chr12 1902177 C-T Hetero INTRON
SBS Chr12 12270778 G-A Hetero INTERGENIC
SBS Chr12 14501727 G-C Hetero INTERGENIC
SBS Chr12 17003648 T-A Hetero INTERGENIC
SBS Chr12 18191235 G-A Hetero INTERGENIC
SBS Chr12 23110606 G-A Homo INTERGENIC

Deletions: 20

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 3107472 3107474 2
Deletion Chr6 5698794 5698796 2
Deletion Chr11 6220577 6220585 8
Deletion Chr3 7421886 7421898 12
Deletion Chr6 8001128 8001129 1 OsKitaake06g101900
Deletion Chr8 8891001 8900000 8999 OsKitaake08g081500
Deletion Chr7 9021424 9021425 1
Deletion Chr1 10645374 10645376 2
Deletion Chr11 11602681 11602686 5
Deletion Chr6 12625576 12625577 1
Deletion Chr9 18395191 18395208 17
Deletion Chr9 20955842 20955851 9
Deletion Chr11 21784590 21784600 10
Deletion Chr8 22269195 22269197 2 OsKitaake08g170100
Deletion Chr7 24573378 24573379 1 OsKitaake07g219000
Deletion Chr3 25995902 25995904 2
Deletion Chr11 26331506 26331517 11
Deletion Chr8 28506548 28506550 2
Deletion Chr2 32202070 32202071 1
Deletion Chr3 36192045 36192048 3 OsKitaake03g400400

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 29201755 29201759 3
Insertion Chr2 27253932 27253935 2
Insertion Chr3 9342174 9342177 2
Insertion Chr7 12758110 12758113 2

Inversions: 7

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 11130679 11605154
Inversion Chr10 13028313 13220472
Inversion Chr10 13028324 13220524
Inversion Chr2 20587103 20653763
Inversion Chr2 20587115 20653840
Inversion Chr1 38158533 38357394 OsKitaake01g407000
Inversion Chr1 38158541 38357395 OsKitaake01g407000

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr2 20653773 Chr1 19715557
Translocation Chr2 20653831 Chr1 19715561

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5161098	C-T	Hetero	INTERGENIC
SBS	Chr1	9618529	T-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g123200
SBS	Chr1	12177118	G-A	Hetero	INTERGENIC
SBS	Chr1	15632902	C-T	Hetero	INTERGENIC
SBS	Chr1	36459138	G-A	Homo	UTR_3_PRIME
SBS	Chr1	38530600	C-T	Homo	INTERGENIC
SBS	Chr1	43546968	C-A	Homo	INTRON
SBS	Chr2	722222	C-A	Homo	INTERGENIC
SBS	Chr2	11700045	G-A	Hetero	INTERGENIC
SBS	Chr2	18864622	G-A	Hetero	INTERGENIC
SBS	Chr2	24611063	C-T	Hetero	INTERGENIC
SBS	Chr3	11970091	T-C	Homo	INTRON
SBS	Chr3	14339132	A-G	Hetero	INTERGENIC
SBS	Chr3	15285697	C-T	Homo	INTERGENIC
SBS	Chr3	21877890	C-T	Homo	INTERGENIC
SBS	Chr3	30084677	A-G	Hetero	INTERGENIC
SBS	Chr4	3582145	C-G	Hetero	INTERGENIC
SBS	Chr4	23607114	G-T	Homo	INTERGENIC
SBS	Chr5	4924463	T-A	Homo	INTERGENIC
SBS	Chr5	11168790	A-T	Hetero	INTERGENIC
SBS	Chr5	13728885	C-T	Hetero	INTERGENIC
SBS	Chr5	16432019	C-T	Hetero	INTERGENIC
SBS	Chr5	18837292	C-T	Homo	INTERGENIC
SBS	Chr6	11692410	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g127500
SBS	Chr6	12962269	A-T	Homo	INTRON
SBS	Chr6	15731463	T-C	Homo	INTERGENIC
SBS	Chr7	10213946	A-T	Hetero	INTERGENIC
SBS	Chr7	11183119	G-T	Hetero	INTERGENIC
SBS	Chr7	13641086	C-T	Hetero	INTERGENIC
SBS	Chr8	21023310	T-A	Homo	INTERGENIC
SBS	Chr10	10556532	T-C	Homo	INTERGENIC
SBS	Chr10	12235785	T-C	Hetero	UTR_3_PRIME
SBS	Chr10	12890870	C-G	Hetero	INTERGENIC
SBS	Chr10	14409212	T-C	Hetero	INTERGENIC
SBS	Chr10	16194036	C-T	Hetero	INTERGENIC
SBS	Chr11	440503	C-A	Hetero	INTERGENIC
SBS	Chr11	6118754	A-C	Hetero	INTERGENIC
SBS	Chr11	6576492	T-G	Hetero	INTERGENIC
SBS	Chr11	9127035	T-C	Hetero	INTERGENIC
SBS	Chr11	15383411	C-T	Hetero	INTERGENIC
SBS	Chr11	25459685	G-A	Homo	INTERGENIC
SBS	Chr12	1902177	C-T	Hetero	INTRON
SBS	Chr12	12270778	G-A	Hetero	INTERGENIC
SBS	Chr12	14501727	G-C	Hetero	INTERGENIC
SBS	Chr12	17003648	T-A	Hetero	INTERGENIC
SBS	Chr12	18191235	G-A	Hetero	INTERGENIC
SBS	Chr12	23110606	G-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	3107472	3107474	2
Deletion	Chr6	5698794	5698796	2
Deletion	Chr11	6220577	6220585	8
Deletion	Chr3	7421886	7421898	12
Deletion	Chr6	8001128	8001129	1	OsKitaake06g101900
Deletion	Chr8	8891001	8900000	8999	OsKitaake08g081500
Deletion	Chr7	9021424	9021425	1
Deletion	Chr1	10645374	10645376	2
Deletion	Chr11	11602681	11602686	5
Deletion	Chr6	12625576	12625577	1
Deletion	Chr9	18395191	18395208	17
Deletion	Chr9	20955842	20955851	9
Deletion	Chr11	21784590	21784600	10
Deletion	Chr8	22269195	22269197	2	OsKitaake08g170100
Deletion	Chr7	24573378	24573379	1	OsKitaake07g219000
Deletion	Chr3	25995902	25995904	2
Deletion	Chr11	26331506	26331517	11
Deletion	Chr8	28506548	28506550	2
Deletion	Chr2	32202070	32202071	1
Deletion	Chr3	36192045	36192048	3	OsKitaake03g400400

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	11130679	11605154
Inversion	Chr10	13028313	13220472
Inversion	Chr10	13028324	13220524
Inversion	Chr2	20587103	20653763
Inversion	Chr2	20587115	20653840
Inversion	Chr1	38158533	38357394	OsKitaake01g407000
Inversion	Chr1	38158541	38357395	OsKitaake01g407000

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes