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Mutant Information

Mutant Name	FN1109-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1109-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 44

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 7451315 G-A Homo INTRON
SBS Chr1 10515421 A-C Hetero INTERGENIC
SBS Chr1 11325719 C-A Hetero INTERGENIC
SBS Chr1 22383824 A-T Hetero INTRON
SBS Chr2 499394 C-T Hetero INTERGENIC
SBS Chr2 14704131 G-A Hetero INTERGENIC
SBS Chr2 29132139 A-T Hetero INTERGENIC
SBS Chr2 32541102 G-A Homo INTERGENIC
SBS Chr2 33110366 T-C Hetero INTERGENIC
SBS Chr2 33552362 T-G Hetero INTERGENIC
SBS Chr3 3473843 G-A Hetero INTERGENIC
SBS Chr3 7423333 G-A Hetero INTERGENIC
SBS Chr3 14653271 C-T Homo INTERGENIC
SBS Chr3 15702223 C-T Homo INTERGENIC
SBS Chr3 21270732 C-T Homo INTERGENIC
SBS Chr3 22120030 A-G Hetero INTERGENIC
SBS Chr3 22725842 G-A Hetero INTERGENIC
SBS Chr3 27092565 C-G Hetero INTERGENIC
SBS Chr4 3904249 T-C Hetero INTERGENIC
SBS Chr4 10341207 A-T Homo INTERGENIC
SBS Chr4 12273944 T-G Homo INTERGENIC
SBS Chr4 14810979 T-G Hetero INTERGENIC
SBS Chr4 19075573 A-C Hetero INTERGENIC
SBS Chr5 14722945 C-G Homo INTERGENIC
SBS Chr6 7165427 G-A Hetero INTERGENIC
SBS Chr6 12954515 C-T Hetero INTERGENIC
SBS Chr6 30673357 A-T Hetero INTERGENIC
SBS Chr7 6897348 G-C Hetero INTERGENIC
SBS Chr7 13115775 A-G Hetero INTERGENIC
SBS Chr8 7312535 A-T Hetero INTERGENIC
SBS Chr8 10868477 G-T Hetero UTR_5_PRIME
SBS Chr8 16328262 G-A Hetero INTERGENIC
SBS Chr8 23392480 C-T Homo INTRON
SBS Chr9 4089160 G-A Homo INTERGENIC
SBS Chr9 6215969 T-A Homo INTERGENIC
SBS Chr9 7479247 G-A Homo INTERGENIC
SBS Chr9 9917094 T-A Homo INTERGENIC
SBS Chr9 12421908 G-T Hetero INTERGENIC
SBS Chr10 15670258 G-A Hetero INTERGENIC
SBS Chr11 17963322 G-A Homo UTR_3_PRIME
SBS Chr11 21310796 G-A Homo INTERGENIC
SBS Chr11 27234398 C-T Hetero INTERGENIC
SBS Chr12 9423359 C-T Homo INTERGENIC
SBS Chr12 16254088 G-A Homo INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 5295296 5295297 1
Deletion Chr5 7215821 7215825 4
Deletion Chr6 7489307 7489308 1
Deletion Chr4 11077905 11077907 2
Deletion Chr5 11348957 11348960 3
Deletion Chr5 13406885 13406886 1
Deletion Chr5 14562694 14562695 1
Deletion Chr2 16155865 16155879 14
Deletion Chr3 16600294 16600301 7
Deletion Chr2 16812785 16812791 6
Deletion Chr2 19500734 19500748 14
Deletion Chr12 23779961 23779965 4
Deletion Chr1 28562330 28562331 1
Deletion Chr2 36609811 36609813 2
Deletion Chr1 37211001 37271000 59999 6

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr7 5656390 5656393 2
Insertion Chr10 662724 662727 2
Insertion Chr11 19496484 19496487 2

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 2022432 2296877 OsKitaake06g029800
Inversion Chr6 2022441 2301603 OsKitaake06g029900
Inversion Chr5 24206572 24431591 2
Inversion Chr5 24206631 24431595 2
Inversion Chr1 37104866 37322898 OsKitaake01g398300

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 31020 Chr6 2296885 2
Translocation Chr12 53775 Chr6 2301592 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7451315	G-A	Homo	INTRON
SBS	Chr1	10515421	A-C	Hetero	INTERGENIC
SBS	Chr1	11325719	C-A	Hetero	INTERGENIC
SBS	Chr1	22383824	A-T	Hetero	INTRON
SBS	Chr2	499394	C-T	Hetero	INTERGENIC
SBS	Chr2	14704131	G-A	Hetero	INTERGENIC
SBS	Chr2	29132139	A-T	Hetero	INTERGENIC
SBS	Chr2	32541102	G-A	Homo	INTERGENIC
SBS	Chr2	33110366	T-C	Hetero	INTERGENIC
SBS	Chr2	33552362	T-G	Hetero	INTERGENIC
SBS	Chr3	3473843	G-A	Hetero	INTERGENIC
SBS	Chr3	7423333	G-A	Hetero	INTERGENIC
SBS	Chr3	14653271	C-T	Homo	INTERGENIC
SBS	Chr3	15702223	C-T	Homo	INTERGENIC
SBS	Chr3	21270732	C-T	Homo	INTERGENIC
SBS	Chr3	22120030	A-G	Hetero	INTERGENIC
SBS	Chr3	22725842	G-A	Hetero	INTERGENIC
SBS	Chr3	27092565	C-G	Hetero	INTERGENIC
SBS	Chr4	3904249	T-C	Hetero	INTERGENIC
SBS	Chr4	10341207	A-T	Homo	INTERGENIC
SBS	Chr4	12273944	T-G	Homo	INTERGENIC
SBS	Chr4	14810979	T-G	Hetero	INTERGENIC
SBS	Chr4	19075573	A-C	Hetero	INTERGENIC
SBS	Chr5	14722945	C-G	Homo	INTERGENIC
SBS	Chr6	7165427	G-A	Hetero	INTERGENIC
SBS	Chr6	12954515	C-T	Hetero	INTERGENIC
SBS	Chr6	30673357	A-T	Hetero	INTERGENIC
SBS	Chr7	6897348	G-C	Hetero	INTERGENIC
SBS	Chr7	13115775	A-G	Hetero	INTERGENIC
SBS	Chr8	7312535	A-T	Hetero	INTERGENIC
SBS	Chr8	10868477	G-T	Hetero	UTR_5_PRIME
SBS	Chr8	16328262	G-A	Hetero	INTERGENIC
SBS	Chr8	23392480	C-T	Homo	INTRON
SBS	Chr9	4089160	G-A	Homo	INTERGENIC
SBS	Chr9	6215969	T-A	Homo	INTERGENIC
SBS	Chr9	7479247	G-A	Homo	INTERGENIC
SBS	Chr9	9917094	T-A	Homo	INTERGENIC
SBS	Chr9	12421908	G-T	Hetero	INTERGENIC
SBS	Chr10	15670258	G-A	Hetero	INTERGENIC
SBS	Chr11	17963322	G-A	Homo	UTR_3_PRIME
SBS	Chr11	21310796	G-A	Homo	INTERGENIC
SBS	Chr11	27234398	C-T	Hetero	INTERGENIC
SBS	Chr12	9423359	C-T	Homo	INTERGENIC
SBS	Chr12	16254088	G-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	5295296	5295297	1
Deletion	Chr5	7215821	7215825	4
Deletion	Chr6	7489307	7489308	1
Deletion	Chr4	11077905	11077907	2
Deletion	Chr5	11348957	11348960	3
Deletion	Chr5	13406885	13406886	1
Deletion	Chr5	14562694	14562695	1
Deletion	Chr2	16155865	16155879	14
Deletion	Chr3	16600294	16600301	7
Deletion	Chr2	16812785	16812791	6
Deletion	Chr2	19500734	19500748	14
Deletion	Chr12	23779961	23779965	4
Deletion	Chr1	28562330	28562331	1
Deletion	Chr2	36609811	36609813	2
Deletion	Chr1	37211001	37271000	59999	6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	2022432	2296877	OsKitaake06g029800
Inversion	Chr6	2022441	2301603	OsKitaake06g029900
Inversion	Chr5	24206572	24431591	2
Inversion	Chr5	24206631	24431595	2
Inversion	Chr1	37104866	37322898	OsKitaake01g398300

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes