Search Kitaake

Mutant Information

Mutant Name	FN1112-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1112-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 40

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 15886542 A-T Homo INTERGENIC
SBS Chr1 16768301 A-G Homo INTERGENIC
SBS Chr1 19890220 C-T Homo INTERGENIC
SBS Chr1 19890221 C-T Homo INTERGENIC
SBS Chr1 29323879 C-G Homo UTR_5_PRIME
SBS Chr2 2400577 C-T Hetero INTERGENIC
SBS Chr2 3731022 C-T Hetero INTERGENIC
SBS Chr2 17019049 A-G Hetero INTERGENIC
SBS Chr2 21419533 A-C Hetero INTERGENIC
SBS Chr3 1081092 C-G Hetero UTR_5_PRIME
SBS Chr3 6784900 T-A Hetero INTERGENIC
SBS Chr3 8174127 C-T Hetero INTERGENIC
SBS Chr3 34150146 T-A Homo INTERGENIC
SBS Chr4 7357526 A-G Hetero INTERGENIC
SBS Chr4 17675909 A-T Hetero INTERGENIC
SBS Chr4 24822140 C-T Hetero INTERGENIC
SBS Chr5 2012624 T-C Hetero INTERGENIC
SBS Chr5 2031329 A-C Hetero INTERGENIC
SBS Chr5 13238052 G-A Hetero INTERGENIC
SBS Chr5 14814892 C-T Hetero INTERGENIC
SBS Chr5 20664605 A-G Hetero INTERGENIC
SBS Chr5 22041841 G-A Homo INTERGENIC
SBS Chr6 7948137 G-A Hetero INTERGENIC
SBS Chr6 29416201 A-C Hetero INTERGENIC
SBS Chr7 2749078 C-T Hetero INTERGENIC
SBS Chr8 7474263 C-T Hetero INTERGENIC
SBS Chr8 13064127 G-A Homo INTERGENIC
SBS Chr8 17962664 A-G Hetero INTRON
SBS Chr9 6633879 A-G Hetero INTERGENIC
SBS Chr9 11638947 C-T Hetero INTERGENIC
SBS Chr10 10930743 T-C Homo INTERGENIC
SBS Chr10 21822048 A-G Homo INTRON
SBS Chr11 13282809 T-A Hetero INTERGENIC
SBS Chr11 16833258 T-C Hetero INTERGENIC
SBS Chr11 21903108 A-G Hetero INTERGENIC
SBS Chr12 3188688 A-C Homo INTERGENIC
SBS Chr12 8554432 T-C Hetero INTERGENIC
SBS Chr12 10897475 A-G Homo INTERGENIC
SBS Chr12 14383528 A-G Hetero INTERGENIC
SBS Chr12 25264761 A-G Hetero INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 4402500 4402501 1
Deletion Chr3 5785092 5785097 5
Deletion Chr7 6802830 6802847 17
Deletion Chr2 8080396 8080414 18
Deletion Chr3 9494266 9494267 1
Deletion Chr12 9611428 9611429 1
Deletion Chr9 10592403 10592404 1
Deletion Chr5 14882344 14882346 2
Deletion Chr7 19378809 19378816 7
Deletion Chr11 20480530 20480537 7
Deletion Chr5 24390238 24390243 5
Deletion Chr5 24908134 24908144 10
Deletion Chr6 29196932 29196938 6
Deletion Chr1 30717965 30717971 6
Deletion Chr1 31972540 31972545 5 OsKitaake01g322300
Deletion Chr2 34696385 34696394 9

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 26782867 26782870 2
Insertion Chr3 28425865 28425868 2
Insertion Chr5 29461455 29461458 2
Insertion Chr8 8947758 8947761 2
Insertion Chr11 2678059 2678062 2
Insertion Chr11 25911464 25911467 2

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 14288593 Chr7 17206037 OsKitaake09g096100
Translocation Chr9 14288594 Chr7 17205587 OsKitaake09g096100

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15886542	A-T	Homo	INTERGENIC
SBS	Chr1	16768301	A-G	Homo	INTERGENIC
SBS	Chr1	19890220	C-T	Homo	INTERGENIC
SBS	Chr1	19890221	C-T	Homo	INTERGENIC
SBS	Chr1	29323879	C-G	Homo	UTR_5_PRIME
SBS	Chr2	2400577	C-T	Hetero	INTERGENIC
SBS	Chr2	3731022	C-T	Hetero	INTERGENIC
SBS	Chr2	17019049	A-G	Hetero	INTERGENIC
SBS	Chr2	21419533	A-C	Hetero	INTERGENIC
SBS	Chr3	1081092	C-G	Hetero	UTR_5_PRIME
SBS	Chr3	6784900	T-A	Hetero	INTERGENIC
SBS	Chr3	8174127	C-T	Hetero	INTERGENIC
SBS	Chr3	34150146	T-A	Homo	INTERGENIC
SBS	Chr4	7357526	A-G	Hetero	INTERGENIC
SBS	Chr4	17675909	A-T	Hetero	INTERGENIC
SBS	Chr4	24822140	C-T	Hetero	INTERGENIC
SBS	Chr5	2012624	T-C	Hetero	INTERGENIC
SBS	Chr5	2031329	A-C	Hetero	INTERGENIC
SBS	Chr5	13238052	G-A	Hetero	INTERGENIC
SBS	Chr5	14814892	C-T	Hetero	INTERGENIC
SBS	Chr5	20664605	A-G	Hetero	INTERGENIC
SBS	Chr5	22041841	G-A	Homo	INTERGENIC
SBS	Chr6	7948137	G-A	Hetero	INTERGENIC
SBS	Chr6	29416201	A-C	Hetero	INTERGENIC
SBS	Chr7	2749078	C-T	Hetero	INTERGENIC
SBS	Chr8	7474263	C-T	Hetero	INTERGENIC
SBS	Chr8	13064127	G-A	Homo	INTERGENIC
SBS	Chr8	17962664	A-G	Hetero	INTRON
SBS	Chr9	6633879	A-G	Hetero	INTERGENIC
SBS	Chr9	11638947	C-T	Hetero	INTERGENIC
SBS	Chr10	10930743	T-C	Homo	INTERGENIC
SBS	Chr10	21822048	A-G	Homo	INTRON
SBS	Chr11	13282809	T-A	Hetero	INTERGENIC
SBS	Chr11	16833258	T-C	Hetero	INTERGENIC
SBS	Chr11	21903108	A-G	Hetero	INTERGENIC
SBS	Chr12	3188688	A-C	Homo	INTERGENIC
SBS	Chr12	8554432	T-C	Hetero	INTERGENIC
SBS	Chr12	10897475	A-G	Homo	INTERGENIC
SBS	Chr12	14383528	A-G	Hetero	INTERGENIC
SBS	Chr12	25264761	A-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	4402500	4402501	1
Deletion	Chr3	5785092	5785097	5
Deletion	Chr7	6802830	6802847	17
Deletion	Chr2	8080396	8080414	18
Deletion	Chr3	9494266	9494267	1
Deletion	Chr12	9611428	9611429	1
Deletion	Chr9	10592403	10592404	1
Deletion	Chr5	14882344	14882346	2
Deletion	Chr7	19378809	19378816	7
Deletion	Chr11	20480530	20480537	7
Deletion	Chr5	24390238	24390243	5
Deletion	Chr5	24908134	24908144	10
Deletion	Chr6	29196932	29196938	6
Deletion	Chr1	30717965	30717971	6
Deletion	Chr1	31972540	31972545	5	OsKitaake01g322300
Deletion	Chr2	34696385	34696394	9

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	14288593	Chr7	17206037	OsKitaake09g096100
Translocation	Chr9	14288594	Chr7	17205587	OsKitaake09g096100

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes