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Mutant Information

Mutant Name	FN1113-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1113-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 42

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 15960465 A-G Hetero INTERGENIC
SBS Chr1 19481697 G-A Hetero INTERGENIC
SBS Chr1 35086428 G-C Hetero INTERGENIC
SBS Chr1 39543501 G-A Hetero INTERGENIC
SBS Chr2 9248984 A-C Hetero INTERGENIC
SBS Chr2 15269768 G-A Hetero INTERGENIC
SBS Chr2 15269770 T-A Hetero INTERGENIC
SBS Chr2 15284348 C-T Hetero INTRON
SBS Chr2 28616666 C-G Hetero INTERGENIC
SBS Chr3 5949162 T-C Homo INTERGENIC
SBS Chr3 5949167 T-C Homo INTERGENIC
SBS Chr3 5949175 A-T Homo INTERGENIC
SBS Chr3 14677151 A-T Hetero INTERGENIC
SBS Chr3 16207624 C-G Homo INTERGENIC
SBS Chr3 19827824 A-G Hetero INTERGENIC
SBS Chr3 31747795 C-T Hetero INTRON
SBS Chr3 36766030 C-T Hetero INTRON
SBS Chr5 4590601 C-T Hetero INTERGENIC
SBS Chr5 14308664 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake05g109500
SBS Chr5 14938013 G-A Hetero INTERGENIC
SBS Chr6 2322760 C-T Hetero INTRON
SBS Chr6 3516489 A-C Hetero INTERGENIC
SBS Chr6 3611968 T-C Hetero INTERGENIC
SBS Chr6 18005628 G-A Hetero INTERGENIC
SBS Chr6 28938360 A-G Homo INTERGENIC
SBS Chr7 10772447 G-C Homo INTERGENIC
SBS Chr7 22830047 G-A Hetero INTERGENIC
SBS Chr7 22937932 C-G Hetero INTRON
SBS Chr8 1381281 C-A Hetero INTERGENIC
SBS Chr8 1443611 C-G Hetero INTERGENIC
SBS Chr8 18021891 T-A Homo INTERGENIC
SBS Chr8 24590653 A-T Hetero INTERGENIC
SBS Chr9 4381507 G-T Homo INTERGENIC
SBS Chr10 7084519 C-A Hetero INTERGENIC
SBS Chr10 8667354 A-G Hetero INTERGENIC
SBS Chr10 12375697 C-T Homo INTERGENIC
SBS Chr12 8824376 C-T Hetero INTERGENIC
SBS Chr12 10647931 C-T Hetero INTERGENIC
SBS Chr12 19211218 C-T Hetero INTERGENIC
SBS Chr12 23073483 A-G Hetero INTERGENIC
SBS Chr12 23073485 A-T Hetero INTERGENIC
SBS Chr12 23642440 A-T Hetero INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 2132977 2133252 275
Deletion Chr9 4232668 4232672 4
Deletion Chr6 9376874 9376875 1
Deletion Chr10 10338590 10338712 122
Deletion Chr6 12643066 12643067 1
Deletion Chr10 13466389 13466397 8
Deletion Chr10 17565533 17565541 8
Deletion Chr7 17851625 17851628 3
Deletion Chr3 18729596 18729600 4
Deletion Chr3 18816817 18816826 9 OsKitaake03g226600
Deletion Chr3 20571732 20571733 1
Deletion Chr4 24391839 24391935 96 OsKitaake04g158400
Deletion Chr4 26164508 26164510 2
Deletion Chr6 28937632 28937635 3
Deletion Chr1 32061001 32093000 31999 4
Deletion Chr1 32180001 32192000 11999 OsKitaake01g325200
Deletion Chr1 42800198 42800216 18

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 10025337 10025340 2
Insertion Chr1 15278316 15278324 7
Insertion Chr4 1061702 1061705 2
Insertion Chr4 29935645 29935651 5
Insertion Chr7 8659994 8659997 2
Insertion Chr7 17400373 17400376 2
Insertion Chr9 9445784 9445791 6

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15960465	A-G	Hetero	INTERGENIC
SBS	Chr1	19481697	G-A	Hetero	INTERGENIC
SBS	Chr1	35086428	G-C	Hetero	INTERGENIC
SBS	Chr1	39543501	G-A	Hetero	INTERGENIC
SBS	Chr2	9248984	A-C	Hetero	INTERGENIC
SBS	Chr2	15269768	G-A	Hetero	INTERGENIC
SBS	Chr2	15269770	T-A	Hetero	INTERGENIC
SBS	Chr2	15284348	C-T	Hetero	INTRON
SBS	Chr2	28616666	C-G	Hetero	INTERGENIC
SBS	Chr3	5949162	T-C	Homo	INTERGENIC
SBS	Chr3	5949167	T-C	Homo	INTERGENIC
SBS	Chr3	5949175	A-T	Homo	INTERGENIC
SBS	Chr3	14677151	A-T	Hetero	INTERGENIC
SBS	Chr3	16207624	C-G	Homo	INTERGENIC
SBS	Chr3	19827824	A-G	Hetero	INTERGENIC
SBS	Chr3	31747795	C-T	Hetero	INTRON
SBS	Chr3	36766030	C-T	Hetero	INTRON
SBS	Chr5	4590601	C-T	Hetero	INTERGENIC
SBS	Chr5	14308664	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g109500
SBS	Chr5	14938013	G-A	Hetero	INTERGENIC
SBS	Chr6	2322760	C-T	Hetero	INTRON
SBS	Chr6	3516489	A-C	Hetero	INTERGENIC
SBS	Chr6	3611968	T-C	Hetero	INTERGENIC
SBS	Chr6	18005628	G-A	Hetero	INTERGENIC
SBS	Chr6	28938360	A-G	Homo	INTERGENIC
SBS	Chr7	10772447	G-C	Homo	INTERGENIC
SBS	Chr7	22830047	G-A	Hetero	INTERGENIC
SBS	Chr7	22937932	C-G	Hetero	INTRON
SBS	Chr8	1381281	C-A	Hetero	INTERGENIC
SBS	Chr8	1443611	C-G	Hetero	INTERGENIC
SBS	Chr8	18021891	T-A	Homo	INTERGENIC
SBS	Chr8	24590653	A-T	Hetero	INTERGENIC
SBS	Chr9	4381507	G-T	Homo	INTERGENIC
SBS	Chr10	7084519	C-A	Hetero	INTERGENIC
SBS	Chr10	8667354	A-G	Hetero	INTERGENIC
SBS	Chr10	12375697	C-T	Homo	INTERGENIC
SBS	Chr12	8824376	C-T	Hetero	INTERGENIC
SBS	Chr12	10647931	C-T	Hetero	INTERGENIC
SBS	Chr12	19211218	C-T	Hetero	INTERGENIC
SBS	Chr12	23073483	A-G	Hetero	INTERGENIC
SBS	Chr12	23073485	A-T	Hetero	INTERGENIC
SBS	Chr12	23642440	A-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	2132977	2133252	275
Deletion	Chr9	4232668	4232672	4
Deletion	Chr6	9376874	9376875	1
Deletion	Chr10	10338590	10338712	122
Deletion	Chr6	12643066	12643067	1
Deletion	Chr10	13466389	13466397	8
Deletion	Chr10	17565533	17565541	8
Deletion	Chr7	17851625	17851628	3
Deletion	Chr3	18729596	18729600	4
Deletion	Chr3	18816817	18816826	9	OsKitaake03g226600
Deletion	Chr3	20571732	20571733	1
Deletion	Chr4	24391839	24391935	96	OsKitaake04g158400
Deletion	Chr4	26164508	26164510	2
Deletion	Chr6	28937632	28937635	3
Deletion	Chr1	32061001	32093000	31999	4
Deletion	Chr1	32180001	32192000	11999	OsKitaake01g325200
Deletion	Chr1	42800198	42800216	18

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes