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Mutant Information

Mutant Name	FN1114-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1114-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 44

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1592773 T-A Hetero INTRON
SBS Chr1 14520224 T-G Homo INTERGENIC
SBS Chr1 30579052 A-C Hetero UTR_3_PRIME
SBS Chr1 39712413 T-C Hetero INTERGENIC
SBS Chr1 43146361 G-A Hetero INTERGENIC
SBS Chr2 5580537 C-G Hetero INTERGENIC
SBS Chr2 20606349 G-A Homo INTERGENIC
SBS Chr3 7077807 A-G Homo INTERGENIC
SBS Chr3 7629452 A-T Hetero UTR_3_PRIME
SBS Chr3 18197959 G-A Hetero INTERGENIC
SBS Chr3 21982542 T-C Hetero INTERGENIC
SBS Chr3 22668112 T-C Homo UTR_3_PRIME
SBS Chr3 31879936 G-A Homo INTERGENIC
SBS Chr4 2035334 T-A Hetero INTRON
SBS Chr4 9482510 G-T Hetero INTERGENIC
SBS Chr4 14324668 G-C Hetero INTERGENIC
SBS Chr4 28301263 T-C Hetero UTR_3_PRIME
SBS Chr4 31290572 T-C Hetero INTERGENIC
SBS Chr5 10087528 G-T Hetero INTERGENIC
SBS Chr5 12018660 G-A Hetero INTERGENIC
SBS Chr5 17892869 C-G Hetero INTERGENIC
SBS Chr5 29978688 T-A Homo INTERGENIC
SBS Chr6 15933925 A-G Hetero INTERGENIC
SBS Chr6 17543856 A-G Hetero INTERGENIC
SBS Chr7 2449133 T-G Hetero INTERGENIC
SBS Chr8 14069956 C-T Homo INTERGENIC
SBS Chr8 21360138 G-A Hetero INTERGENIC
SBS Chr8 25779242 G-A Hetero INTERGENIC
SBS Chr9 4577601 A-G Homo INTERGENIC
SBS Chr9 5196847 C-T Hetero INTERGENIC
SBS Chr9 10347138 A-G Hetero INTERGENIC
SBS Chr9 10504462 T-C Hetero INTERGENIC
SBS Chr9 15458948 T-C Hetero INTERGENIC
SBS Chr9 17189114 T-C Hetero INTERGENIC
SBS Chr9 17351411 C-T Hetero INTERGENIC
SBS Chr10 18941041 T-C Homo INTERGENIC
SBS Chr10 20160686 A-C Homo INTERGENIC
SBS Chr11 7852700 C-T Hetero INTRON
SBS Chr11 10172301 C-T Homo INTERGENIC
SBS Chr11 11532751 A-G Hetero INTERGENIC
SBS Chr11 16961988 C-G Homo INTERGENIC
SBS Chr11 25833857 G-A Hetero INTERGENIC
SBS Chr11 28164203 C-A Hetero INTERGENIC
SBS Chr12 7773206 C-G Hetero INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 350001 360000 9999
Deletion Chr12 487738 487740 2
Deletion Chr11 1940349 1940351 2
Deletion Chr4 7424208 7424209 1
Deletion Chr10 8158248 8158251 3
Deletion Chr9 10068359 10068378 19
Deletion Chr8 13232195 13232202 7
Deletion Chr4 13932927 13932928 1
Deletion Chr5 15429295 15429297 2
Deletion Chr11 18968101 18968107 6
Deletion Chr12 19824001 19869000 44999 OsKitaake12g148200
Deletion Chr5 20382416 20382418 2
Deletion Chr3 23427951 23427953 2
Deletion Chr2 27772001 27942000 169999 32
Deletion Chr11 28645001 28655000 9999
Deletion Chr1 31818577 31818578 1

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 41315613 41315616 2
Insertion Chr6 2252084 2252087 2
Insertion Chr7 3416576 3416579 2
Insertion Chr8 615099 615102 2

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 7005651 7266375 OsKitaake05g072800
Inversion Chr5 7005652 7274395 OsKitaake05g073000
Inversion Chr12 18191501 18591428

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1592773	T-A	Hetero	INTRON
SBS	Chr1	14520224	T-G	Homo	INTERGENIC
SBS	Chr1	30579052	A-C	Hetero	UTR_3_PRIME
SBS	Chr1	39712413	T-C	Hetero	INTERGENIC
SBS	Chr1	43146361	G-A	Hetero	INTERGENIC
SBS	Chr2	5580537	C-G	Hetero	INTERGENIC
SBS	Chr2	20606349	G-A	Homo	INTERGENIC
SBS	Chr3	7077807	A-G	Homo	INTERGENIC
SBS	Chr3	7629452	A-T	Hetero	UTR_3_PRIME
SBS	Chr3	18197959	G-A	Hetero	INTERGENIC
SBS	Chr3	21982542	T-C	Hetero	INTERGENIC
SBS	Chr3	22668112	T-C	Homo	UTR_3_PRIME
SBS	Chr3	31879936	G-A	Homo	INTERGENIC
SBS	Chr4	2035334	T-A	Hetero	INTRON
SBS	Chr4	9482510	G-T	Hetero	INTERGENIC
SBS	Chr4	14324668	G-C	Hetero	INTERGENIC
SBS	Chr4	28301263	T-C	Hetero	UTR_3_PRIME
SBS	Chr4	31290572	T-C	Hetero	INTERGENIC
SBS	Chr5	10087528	G-T	Hetero	INTERGENIC
SBS	Chr5	12018660	G-A	Hetero	INTERGENIC
SBS	Chr5	17892869	C-G	Hetero	INTERGENIC
SBS	Chr5	29978688	T-A	Homo	INTERGENIC
SBS	Chr6	15933925	A-G	Hetero	INTERGENIC
SBS	Chr6	17543856	A-G	Hetero	INTERGENIC
SBS	Chr7	2449133	T-G	Hetero	INTERGENIC
SBS	Chr8	14069956	C-T	Homo	INTERGENIC
SBS	Chr8	21360138	G-A	Hetero	INTERGENIC
SBS	Chr8	25779242	G-A	Hetero	INTERGENIC
SBS	Chr9	4577601	A-G	Homo	INTERGENIC
SBS	Chr9	5196847	C-T	Hetero	INTERGENIC
SBS	Chr9	10347138	A-G	Hetero	INTERGENIC
SBS	Chr9	10504462	T-C	Hetero	INTERGENIC
SBS	Chr9	15458948	T-C	Hetero	INTERGENIC
SBS	Chr9	17189114	T-C	Hetero	INTERGENIC
SBS	Chr9	17351411	C-T	Hetero	INTERGENIC
SBS	Chr10	18941041	T-C	Homo	INTERGENIC
SBS	Chr10	20160686	A-C	Homo	INTERGENIC
SBS	Chr11	7852700	C-T	Hetero	INTRON
SBS	Chr11	10172301	C-T	Homo	INTERGENIC
SBS	Chr11	11532751	A-G	Hetero	INTERGENIC
SBS	Chr11	16961988	C-G	Homo	INTERGENIC
SBS	Chr11	25833857	G-A	Hetero	INTERGENIC
SBS	Chr11	28164203	C-A	Hetero	INTERGENIC
SBS	Chr12	7773206	C-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	350001	360000	9999
Deletion	Chr12	487738	487740	2
Deletion	Chr11	1940349	1940351	2
Deletion	Chr4	7424208	7424209	1
Deletion	Chr10	8158248	8158251	3
Deletion	Chr9	10068359	10068378	19
Deletion	Chr8	13232195	13232202	7
Deletion	Chr4	13932927	13932928	1
Deletion	Chr5	15429295	15429297	2
Deletion	Chr11	18968101	18968107	6
Deletion	Chr12	19824001	19869000	44999	OsKitaake12g148200
Deletion	Chr5	20382416	20382418	2
Deletion	Chr3	23427951	23427953	2
Deletion	Chr2	27772001	27942000	169999	32
Deletion	Chr11	28645001	28655000	9999
Deletion	Chr1	31818577	31818578	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	7005651	7266375	OsKitaake05g072800
Inversion	Chr5	7005652	7274395	OsKitaake05g073000
Inversion	Chr12	18191501	18591428

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes