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Mutant Information

Mutant Name	FN1116-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1116-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 46

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2697507 C-A Homo INTRON
SBS Chr1 4928907 C-T Hetero INTERGENIC
SBS Chr1 44252149 C-G Hetero SYNONYMOUS_CODING
SBS Chr2 12535002 C-T Hetero INTERGENIC
SBS Chr2 17330730 C-A Hetero INTERGENIC
SBS Chr2 23070459 C-T Hetero INTERGENIC
SBS Chr2 25649426 A-C Hetero INTERGENIC
SBS Chr2 26851653 G-C Homo INTERGENIC
SBS Chr3 6152058 G-A Homo UTR_5_PRIME
SBS Chr3 6152059 G-A Homo UTR_5_PRIME
SBS Chr3 12184051 A-T Hetero INTERGENIC
SBS Chr3 24927933 C-T Hetero INTERGENIC
SBS Chr3 29270482 C-G Hetero INTERGENIC
SBS Chr3 30019159 C-T Hetero INTERGENIC
SBS Chr3 32258854 C-T Hetero INTERGENIC
SBS Chr3 32346522 G-A Hetero INTERGENIC
SBS Chr3 34312996 C-G Hetero UTR_5_PRIME
SBS Chr3 35268085 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g386300
SBS Chr4 8919346 G-C Hetero INTERGENIC
SBS Chr4 9371946 T-C Hetero INTERGENIC
SBS Chr4 11704355 G-T Hetero INTRON
SBS Chr4 11710216 A-G Hetero UTR_5_PRIME
SBS Chr4 20986108 T-C Hetero INTERGENIC
SBS Chr4 30585331 A-T Hetero INTERGENIC
SBS Chr4 34472515 G-A Hetero INTERGENIC
SBS Chr4 36806002 G-A Hetero INTERGENIC
SBS Chr5 22533340 A-T Hetero INTRON
SBS Chr6 28239069 C-A Homo INTERGENIC
SBS Chr7 6420979 A-G Homo INTERGENIC
SBS Chr7 23523805 A-G Hetero INTERGENIC
SBS Chr8 3684378 G-A Hetero INTERGENIC
SBS Chr8 7522837 A-T Hetero INTERGENIC
SBS Chr9 4122644 A-G Hetero INTERGENIC
SBS Chr9 7089331 C-T Hetero INTERGENIC
SBS Chr10 4634826 C-G Hetero INTERGENIC
SBS Chr10 8165370 G-A Hetero INTERGENIC
SBS Chr10 20043944 T-C Homo INTERGENIC
SBS Chr10 22038430 C-A Hetero INTERGENIC
SBS Chr11 3212846 T-A Hetero INTERGENIC
SBS Chr11 11297420 A-G Hetero INTRON
SBS Chr11 15378761 G-A Homo INTERGENIC
SBS Chr11 22573342 A-G Hetero INTRON
SBS Chr11 23621668 C-T Hetero INTERGENIC
SBS Chr11 23621671 C-T Hetero INTERGENIC
SBS Chr12 904280 A-T Hetero INTERGENIC
SBS Chr12 2989973 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake12g044000

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 3895473 3895476 3
Deletion Chr3 7410115 7410117 2
Deletion Chr10 9753966 9753972 6
Deletion Chr11 10634001 11199000 564999 24
Deletion Chr6 19474967 19474973 6
Deletion Chr4 20654424 20654426 2
Deletion Chr4 28828318 28828320 2
Deletion Chr4 29273256 29273258 2
Deletion Chr2 30183458 30183460 2

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 29287059 29287063 3
Insertion Chr7 19511290 19511293 2
Insertion Chr11 18576873 18576876 2
Insertion Chr5 1847473 1847477 3

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 19198372 19773668
Inversion Chr3 19198376 19776850

Translocations: 6

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr4 8926666 Chr1 9447374
Translocation Chr4 8927764 Chr1 9441343 OsKitaake01g121000
Translocation Chr11 10634191 Chr9 18106929
Translocation Chr11 10634381 Chr9 18106928
Translocation Chr9 18905826 Chr5 2231637 OsKitaake05g025000
Translocation Chr9 18906043 Chr5 2231637 OsKitaake05g025000

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2697507	C-A	Homo	INTRON
SBS	Chr1	4928907	C-T	Hetero	INTERGENIC
SBS	Chr1	44252149	C-G	Hetero	SYNONYMOUS_CODING
SBS	Chr2	12535002	C-T	Hetero	INTERGENIC
SBS	Chr2	17330730	C-A	Hetero	INTERGENIC
SBS	Chr2	23070459	C-T	Hetero	INTERGENIC
SBS	Chr2	25649426	A-C	Hetero	INTERGENIC
SBS	Chr2	26851653	G-C	Homo	INTERGENIC
SBS	Chr3	6152058	G-A	Homo	UTR_5_PRIME
SBS	Chr3	6152059	G-A	Homo	UTR_5_PRIME
SBS	Chr3	12184051	A-T	Hetero	INTERGENIC
SBS	Chr3	24927933	C-T	Hetero	INTERGENIC
SBS	Chr3	29270482	C-G	Hetero	INTERGENIC
SBS	Chr3	30019159	C-T	Hetero	INTERGENIC
SBS	Chr3	32258854	C-T	Hetero	INTERGENIC
SBS	Chr3	32346522	G-A	Hetero	INTERGENIC
SBS	Chr3	34312996	C-G	Hetero	UTR_5_PRIME
SBS	Chr3	35268085	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g386300
SBS	Chr4	8919346	G-C	Hetero	INTERGENIC
SBS	Chr4	9371946	T-C	Hetero	INTERGENIC
SBS	Chr4	11704355	G-T	Hetero	INTRON
SBS	Chr4	11710216	A-G	Hetero	UTR_5_PRIME
SBS	Chr4	20986108	T-C	Hetero	INTERGENIC
SBS	Chr4	30585331	A-T	Hetero	INTERGENIC
SBS	Chr4	34472515	G-A	Hetero	INTERGENIC
SBS	Chr4	36806002	G-A	Hetero	INTERGENIC
SBS	Chr5	22533340	A-T	Hetero	INTRON
SBS	Chr6	28239069	C-A	Homo	INTERGENIC
SBS	Chr7	6420979	A-G	Homo	INTERGENIC
SBS	Chr7	23523805	A-G	Hetero	INTERGENIC
SBS	Chr8	3684378	G-A	Hetero	INTERGENIC
SBS	Chr8	7522837	A-T	Hetero	INTERGENIC
SBS	Chr9	4122644	A-G	Hetero	INTERGENIC
SBS	Chr9	7089331	C-T	Hetero	INTERGENIC
SBS	Chr10	4634826	C-G	Hetero	INTERGENIC
SBS	Chr10	8165370	G-A	Hetero	INTERGENIC
SBS	Chr10	20043944	T-C	Homo	INTERGENIC
SBS	Chr10	22038430	C-A	Hetero	INTERGENIC
SBS	Chr11	3212846	T-A	Hetero	INTERGENIC
SBS	Chr11	11297420	A-G	Hetero	INTRON
SBS	Chr11	15378761	G-A	Homo	INTERGENIC
SBS	Chr11	22573342	A-G	Hetero	INTRON
SBS	Chr11	23621668	C-T	Hetero	INTERGENIC
SBS	Chr11	23621671	C-T	Hetero	INTERGENIC
SBS	Chr12	904280	A-T	Hetero	INTERGENIC
SBS	Chr12	2989973	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g044000

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	3895473	3895476	3
Deletion	Chr3	7410115	7410117	2
Deletion	Chr10	9753966	9753972	6
Deletion	Chr11	10634001	11199000	564999	24
Deletion	Chr6	19474967	19474973	6
Deletion	Chr4	20654424	20654426	2
Deletion	Chr4	28828318	28828320	2
Deletion	Chr4	29273256	29273258	2
Deletion	Chr2	30183458	30183460	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	19198372	19773668
Inversion	Chr3	19198376	19776850

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes