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| Mutant Information |
|---|
| Mutant Name | FN1117-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1117-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 30
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 5726703 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 16032312 | C-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 21249996 | A-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 26524368 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 38849935 | C-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake01g416500 |
| SBS | Chr1 | 39598581 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 20990722 | G-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 26635239 | C-G | Homo | NON_SYNONYMOUS_CODING | OsKitaake02g266300 |
| SBS | Chr3 | 11527990 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 19473570 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 20188005 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 34542521 | T-C | Homo | INTERGENIC | |
| SBS | Chr4 | 20907785 | A-G | Hetero | INTRON | |
| SBS | Chr4 | 21205470 | C-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 21537988 | A-G | Hetero | INTRON | |
| SBS | Chr4 | 22724370 | A-T | Hetero | UTR_3_PRIME | |
| SBS | Chr5 | 21441388 | G-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 22552378 | T-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 2279511 | A-G | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr6 | 2466160 | C-T | Homo | INTERGENIC | |
| SBS | Chr6 | 7687657 | T-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 26149678 | T-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 4873956 | T-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 11940972 | C-T | Homo | INTERGENIC | |
| SBS | Chr10 | 2857686 | C-T | Hetero | UTR_3_PRIME | |
| SBS | Chr10 | 24034295 | A-G | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr11 | 6147659 | A-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 7843544 | G-A | Hetero | START_GAINED | |
| SBS | Chr11 | 15378761 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 18531194 | G-T | Hetero | INTERGENIC |
Deletions: 10
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr12 | 2002315 | 2002319 | 4 | OsKitaake12g031400 |
| Deletion | Chr8 | 5397001 | 5536000 | 138999 | 21 |
| Deletion | Chr9 | 6216922 | 6216923 | 1 | |
| Deletion | Chr2 | 8469300 | 8469302 | 2 | |
| Deletion | Chr6 | 8978573 | 8978574 | 1 | |
| Deletion | Chr9 | 12001605 | 12001612 | 7 | OsKitaake09g076500 |
| Deletion | Chr2 | 19178442 | 19178450 | 8 | |
| Deletion | Chr6 | 27146441 | 27146442 | 1 | |
| Deletion | Chr1 | 33151976 | 33151980 | 4 | |
| Deletion | Chr1 | 38367616 | 38367624 | 8 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr3 | 2897286 | 2897293 | 6 | |
| Insertion | Chr3 | 17745160 | 17745163 | 2 | |
| Insertion | Chr3 | 36821827 | 36821829 | 1 | |
| Insertion | Chr4 | 10143274 | 10143276 | 1 |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr11 | 6149212 | 6472116 |
Translocations: 4
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr11 | 6149188 | Chr1 | 16710476 | |
| Translocation | Chr11 | 7339041 | Chr1 | 16713642 | |
| Translocation | Chr4 | 20913514 | Chr1 | 26622110 | 2 |
| Translocation | Chr4 | 20913635 | Chr1 | 26621380 | OsKitaake04g114200 |