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Mutant Information

Mutant Name	FN1118-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1118-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 43

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4237096 A-G Homo NON_SYNONYMOUS_CODING OsKitaake01g056600
SBS Chr1 20705398 T-C Homo INTRON
SBS Chr1 22012397 C-T Homo INTERGENIC
SBS Chr1 41984741 G-A Hetero UTR_3_PRIME
SBS Chr1 43808618 C-T Hetero INTERGENIC
SBS Chr2 10913214 C-T Hetero INTERGENIC
SBS Chr2 22187272 A-C Homo INTERGENIC
SBS Chr2 33513740 T-A Hetero INTERGENIC
SBS Chr3 4714999 T-C Hetero INTERGENIC
SBS Chr3 9543507 C-T Hetero INTERGENIC
SBS Chr3 17494384 C-T Hetero INTERGENIC
SBS Chr3 22794714 G-A Hetero INTERGENIC
SBS Chr3 32274486 T-A Homo INTERGENIC
SBS Chr4 28965230 G-A Homo INTERGENIC
SBS Chr5 659387 G-A Hetero INTERGENIC
SBS Chr5 4186796 T-C Hetero INTERGENIC
SBS Chr5 14236570 C-T Hetero INTERGENIC
SBS Chr5 21549353 A-G Hetero INTERGENIC
SBS Chr6 6534950 G-A Hetero INTERGENIC
SBS Chr6 20739639 G-A Hetero INTERGENIC
SBS Chr7 339655 C-T Hetero INTERGENIC
SBS Chr7 2421714 C-T Hetero INTERGENIC
SBS Chr7 8022233 C-T Hetero INTERGENIC
SBS Chr7 17539722 C-T Hetero INTERGENIC
SBS Chr7 23333243 C-G Hetero INTERGENIC
SBS Chr8 8536152 A-C Homo INTERGENIC
SBS Chr8 13659194 C-T Hetero INTERGENIC
SBS Chr8 22632938 C-G Homo INTRON
SBS Chr9 2714956 T-C Hetero INTERGENIC
SBS Chr9 3583510 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake09g018600
SBS Chr9 9167091 G-A Hetero INTERGENIC
SBS Chr9 15742330 G-T Hetero INTRON
SBS Chr9 15742331 C-T Hetero INTRON
SBS Chr11 11012676 G-T Homo INTERGENIC
SBS Chr11 12288839 C-T Homo INTERGENIC
SBS Chr11 26842357 G-T Hetero INTERGENIC
SBS Chr11 26842359 A-G Hetero INTERGENIC
SBS Chr11 27497648 T-C Hetero INTERGENIC
SBS Chr12 10353565 T-C Hetero INTERGENIC
SBS Chr12 20506906 G-A Hetero INTERGENIC
SBS Chr12 22777263 T-C Hetero INTERGENIC
SBS Chr12 23998026 G-T Hetero INTERGENIC
SBS Chr12 26084797 A-T Hetero INTERGENIC

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 2596926 2596929 3
Deletion Chr3 2786826 2786829 3
Deletion Chr8 6167723 6167726 3
Deletion Chr8 9901196 9901198 2
Deletion Chr1 20699684 20699695 11
Deletion Chr8 22660001 22731000 70999 6
Deletion Chr2 23930680 23930687 7
Deletion Chr7 24181624 24181626 2
Deletion Chr6 25343901 25343909 8
Deletion Chr8 27257524 27257526 2
Deletion Chr4 28289287 28289290 3

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 17332337 17332340 2
Insertion Chr6 5682607 5682611 3
Insertion Chr7 8326461 8326464 2
Insertion Chr12 12107087 12107090 2
Insertion Chr9 8005391 8005393 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 12302042 12556003 OsKitaake09g080400
Inversion Chr9 12302045 12556003 OsKitaake09g080400

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 8469428 Chr7 21384441
Translocation Chr8 8470244 Chr7 21384438
Translocation Chr11 12316473 Chr5 8508279 OsKitaake11g112950

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4237096	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g056600
SBS	Chr1	20705398	T-C	Homo	INTRON
SBS	Chr1	22012397	C-T	Homo	INTERGENIC
SBS	Chr1	41984741	G-A	Hetero	UTR_3_PRIME
SBS	Chr1	43808618	C-T	Hetero	INTERGENIC
SBS	Chr2	10913214	C-T	Hetero	INTERGENIC
SBS	Chr2	22187272	A-C	Homo	INTERGENIC
SBS	Chr2	33513740	T-A	Hetero	INTERGENIC
SBS	Chr3	4714999	T-C	Hetero	INTERGENIC
SBS	Chr3	9543507	C-T	Hetero	INTERGENIC
SBS	Chr3	17494384	C-T	Hetero	INTERGENIC
SBS	Chr3	22794714	G-A	Hetero	INTERGENIC
SBS	Chr3	32274486	T-A	Homo	INTERGENIC
SBS	Chr4	28965230	G-A	Homo	INTERGENIC
SBS	Chr5	659387	G-A	Hetero	INTERGENIC
SBS	Chr5	4186796	T-C	Hetero	INTERGENIC
SBS	Chr5	14236570	C-T	Hetero	INTERGENIC
SBS	Chr5	21549353	A-G	Hetero	INTERGENIC
SBS	Chr6	6534950	G-A	Hetero	INTERGENIC
SBS	Chr6	20739639	G-A	Hetero	INTERGENIC
SBS	Chr7	339655	C-T	Hetero	INTERGENIC
SBS	Chr7	2421714	C-T	Hetero	INTERGENIC
SBS	Chr7	8022233	C-T	Hetero	INTERGENIC
SBS	Chr7	17539722	C-T	Hetero	INTERGENIC
SBS	Chr7	23333243	C-G	Hetero	INTERGENIC
SBS	Chr8	8536152	A-C	Homo	INTERGENIC
SBS	Chr8	13659194	C-T	Hetero	INTERGENIC
SBS	Chr8	22632938	C-G	Homo	INTRON
SBS	Chr9	2714956	T-C	Hetero	INTERGENIC
SBS	Chr9	3583510	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g018600
SBS	Chr9	9167091	G-A	Hetero	INTERGENIC
SBS	Chr9	15742330	G-T	Hetero	INTRON
SBS	Chr9	15742331	C-T	Hetero	INTRON
SBS	Chr11	11012676	G-T	Homo	INTERGENIC
SBS	Chr11	12288839	C-T	Homo	INTERGENIC
SBS	Chr11	26842357	G-T	Hetero	INTERGENIC
SBS	Chr11	26842359	A-G	Hetero	INTERGENIC
SBS	Chr11	27497648	T-C	Hetero	INTERGENIC
SBS	Chr12	10353565	T-C	Hetero	INTERGENIC
SBS	Chr12	20506906	G-A	Hetero	INTERGENIC
SBS	Chr12	22777263	T-C	Hetero	INTERGENIC
SBS	Chr12	23998026	G-T	Hetero	INTERGENIC
SBS	Chr12	26084797	A-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	2596926	2596929	3
Deletion	Chr3	2786826	2786829	3
Deletion	Chr8	6167723	6167726	3
Deletion	Chr8	9901196	9901198	2
Deletion	Chr1	20699684	20699695	11
Deletion	Chr8	22660001	22731000	70999	6
Deletion	Chr2	23930680	23930687	7
Deletion	Chr7	24181624	24181626	2
Deletion	Chr6	25343901	25343909	8
Deletion	Chr8	27257524	27257526	2
Deletion	Chr4	28289287	28289290	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	12302042	12556003	OsKitaake09g080400
Inversion	Chr9	12302045	12556003	OsKitaake09g080400

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes