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Mutant Information

Mutant Name	FN1119-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1119-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 32

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr2 3252225 G-A Hetero UTR_5_PRIME
SBS Chr2 13480332 A-T Hetero INTRON
SBS Chr2 19306650 C-T Hetero INTERGENIC
SBS Chr2 27732721 T-A Homo INTERGENIC
SBS Chr3 15293 G-A Hetero SPLICE_SITE_REGION
SBS Chr3 14320425 G-A Hetero INTERGENIC
SBS Chr3 15652753 A-T Hetero INTERGENIC
SBS Chr3 30522397 C-A Homo INTERGENIC
SBS Chr4 23406716 T-A Hetero INTERGENIC
SBS Chr4 27089267 C-T Homo INTERGENIC
SBS Chr4 33723706 G-C Hetero SYNONYMOUS_CODING
SBS Chr4 35761480 G-T Hetero INTERGENIC
SBS Chr4 35761481 A-T Hetero INTERGENIC
SBS Chr5 975963 A-C Hetero INTERGENIC
SBS Chr5 975966 G-T Hetero INTERGENIC
SBS Chr5 21300668 G-A Homo INTERGENIC
SBS Chr6 16257360 G-A Homo INTERGENIC
SBS Chr7 11683868 C-T Hetero INTERGENIC
SBS Chr7 14159932 G-A Hetero INTERGENIC
SBS Chr7 21365422 T-A Homo INTERGENIC
SBS Chr7 22460179 T-C Hetero INTRON
SBS Chr7 26229232 T-A Homo INTRON
SBS Chr8 3124626 C-G Hetero INTERGENIC
SBS Chr8 9828548 A-G Homo INTERGENIC
SBS Chr8 19939349 A-T Hetero INTERGENIC
SBS Chr9 4791083 C-T Homo INTERGENIC
SBS Chr10 13016969 C-T Homo INTERGENIC
SBS Chr11 4124618 C-T Hetero INTERGENIC
SBS Chr11 10919831 T-G Hetero INTERGENIC
SBS Chr11 11652867 G-C Hetero INTERGENIC
SBS Chr11 18376724 T-C Hetero INTERGENIC
SBS Chr12 22742113 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake12g179400

Deletions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 4845416 4845418 2
Deletion Chr8 5400918 5400919 1
Deletion Chr6 11578955 11578962 7
Deletion Chr1 17283622 17284286 664
Deletion Chr1 17988658 17988843 185 OsKitaake01g182400
Deletion Chr7 24619001 24637000 17999 3

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 4661163 4661166 2
Insertion Chr2 10699739 10699742 2
Insertion Chr5 821856 821859 2
Insertion Chr6 17947419 17947422 2
Insertion Chr2 13851976 13851979 2
Insertion Chr5 12633210 12633212 1
Insertion Chr5 30225097 30225105 7

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	3252225	G-A	Hetero	UTR_5_PRIME
SBS	Chr2	13480332	A-T	Hetero	INTRON
SBS	Chr2	19306650	C-T	Hetero	INTERGENIC
SBS	Chr2	27732721	T-A	Homo	INTERGENIC
SBS	Chr3	15293	G-A	Hetero	SPLICE_SITE_REGION
SBS	Chr3	14320425	G-A	Hetero	INTERGENIC
SBS	Chr3	15652753	A-T	Hetero	INTERGENIC
SBS	Chr3	30522397	C-A	Homo	INTERGENIC
SBS	Chr4	23406716	T-A	Hetero	INTERGENIC
SBS	Chr4	27089267	C-T	Homo	INTERGENIC
SBS	Chr4	33723706	G-C	Hetero	SYNONYMOUS_CODING
SBS	Chr4	35761480	G-T	Hetero	INTERGENIC
SBS	Chr4	35761481	A-T	Hetero	INTERGENIC
SBS	Chr5	975963	A-C	Hetero	INTERGENIC
SBS	Chr5	975966	G-T	Hetero	INTERGENIC
SBS	Chr5	21300668	G-A	Homo	INTERGENIC
SBS	Chr6	16257360	G-A	Homo	INTERGENIC
SBS	Chr7	11683868	C-T	Hetero	INTERGENIC
SBS	Chr7	14159932	G-A	Hetero	INTERGENIC
SBS	Chr7	21365422	T-A	Homo	INTERGENIC
SBS	Chr7	22460179	T-C	Hetero	INTRON
SBS	Chr7	26229232	T-A	Homo	INTRON
SBS	Chr8	3124626	C-G	Hetero	INTERGENIC
SBS	Chr8	9828548	A-G	Homo	INTERGENIC
SBS	Chr8	19939349	A-T	Hetero	INTERGENIC
SBS	Chr9	4791083	C-T	Homo	INTERGENIC
SBS	Chr10	13016969	C-T	Homo	INTERGENIC
SBS	Chr11	4124618	C-T	Hetero	INTERGENIC
SBS	Chr11	10919831	T-G	Hetero	INTERGENIC
SBS	Chr11	11652867	G-C	Hetero	INTERGENIC
SBS	Chr11	18376724	T-C	Hetero	INTERGENIC
SBS	Chr12	22742113	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g179400

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	4845416	4845418	2
Deletion	Chr8	5400918	5400919	1
Deletion	Chr6	11578955	11578962	7
Deletion	Chr1	17283622	17284286	664
Deletion	Chr1	17988658	17988843	185	OsKitaake01g182400
Deletion	Chr7	24619001	24637000	17999	3

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes