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Mutant Information

Mutant Name	FN1121-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1121-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 44

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1402260 A-G Hetero INTERGENIC
SBS Chr1 7815885 C-T Homo INTRON
SBS Chr1 40710519 A-G Hetero INTERGENIC
SBS Chr2 1137587 G-A Hetero INTERGENIC
SBS Chr2 25528948 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake02g252000
SBS Chr2 25537222 A-C Hetero INTRON
SBS Chr2 32832893 A-C Hetero INTERGENIC
SBS Chr3 14766239 C-A Hetero INTERGENIC
SBS Chr3 23976857 C-T Homo INTERGENIC
SBS Chr3 32947540 G-A Hetero INTERGENIC
SBS Chr4 2417892 G-T Hetero INTERGENIC
SBS Chr4 18569676 G-A Hetero INTERGENIC
SBS Chr4 24051945 C-T Hetero INTRON
SBS Chr4 29819116 C-A Homo INTRON
SBS Chr4 29819121 T-A Homo INTRON
SBS Chr6 17779309 G-A Hetero INTERGENIC
SBS Chr6 23975457 G-A Hetero INTERGENIC
SBS Chr7 6682697 G-A Homo NON_SYNONYMOUS_CODING OsKitaake07g076700
SBS Chr7 18132157 T-G Hetero UTR_3_PRIME
SBS Chr8 2906814 G-A Hetero INTERGENIC
SBS Chr8 6014547 A-G Hetero UTR_5_PRIME
SBS Chr8 10438283 C-A Hetero INTERGENIC
SBS Chr8 23671189 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake08g182500
SBS Chr10 547583 C-T Hetero INTERGENIC
SBS Chr10 547585 G-T Hetero INTERGENIC
SBS Chr10 15548277 G-T Hetero INTERGENIC
SBS Chr10 16139756 T-C Hetero INTERGENIC
SBS Chr10 16527319 A-T Hetero INTERGENIC
SBS Chr10 18314826 G-A Hetero SYNONYMOUS_CODING
SBS Chr10 18315398 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake10g129500
SBS Chr10 18315399 C-T Hetero SYNONYMOUS_CODING
SBS Chr10 21436540 G-A Hetero INTERGENIC
SBS Chr10 21575803 T-C Hetero UTR_3_PRIME
SBS Chr10 24038509 T-C Hetero INTERGENIC
SBS Chr11 6627344 A-G Homo INTERGENIC
SBS Chr11 11833722 A-G Homo INTERGENIC
SBS Chr11 11833723 G-T Homo INTERGENIC
SBS Chr11 14923169 C-T Homo INTERGENIC
SBS Chr11 16185648 C-T Homo INTERGENIC
SBS Chr11 16185649 C-T Homo INTERGENIC
SBS Chr11 19607109 G-A Hetero INTERGENIC
SBS Chr11 26460518 G-A Homo INTERGENIC
SBS Chr11 28214836 A-C Homo INTERGENIC
SBS Chr12 10970666 A-C Hetero INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 2039222 2039232 10
Deletion Chr9 2049957 2049959 2
Deletion Chr9 5300528 5300534 6
Deletion Chr9 7569416 7569418 2
Deletion Chr6 7730781 7730789 8 OsKitaake06g098500
Deletion Chr4 8345731 8345798 67
Deletion Chr7 10598236 10598263 27
Deletion Chr11 17059862 17059867 5
Deletion Chr1 17242104 17242106 2
Deletion Chr2 17557239 17557253 14
Deletion Chr3 19593240 19593245 5
Deletion Chr6 20204336 20204384 48
Deletion Chr1 20405214 20405231 17
Deletion Chr2 26545414 26545418 4
Deletion Chr1 34039394 34039395 1

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 31798915 31798918 2
Insertion Chr1 12807083 12807086 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 17615154 17786723 2
Inversion Chr7 17615577 17786720 2

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 17615164 Chr5 21028452 OsKitaake07g142700
Translocation Chr8 26089718 Chr1 43026472 2
Translocation Chr8 26089870 Chr1 43026699 2
Translocation Chr11 29102600 Chr8 26708767 OsKitaake08g215500
Translocation Chr11 29102621 Chr8 26679131 OsKitaake08g215100

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1402260	A-G	Hetero	INTERGENIC
SBS	Chr1	7815885	C-T	Homo	INTRON
SBS	Chr1	40710519	A-G	Hetero	INTERGENIC
SBS	Chr2	1137587	G-A	Hetero	INTERGENIC
SBS	Chr2	25528948	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g252000
SBS	Chr2	25537222	A-C	Hetero	INTRON
SBS	Chr2	32832893	A-C	Hetero	INTERGENIC
SBS	Chr3	14766239	C-A	Hetero	INTERGENIC
SBS	Chr3	23976857	C-T	Homo	INTERGENIC
SBS	Chr3	32947540	G-A	Hetero	INTERGENIC
SBS	Chr4	2417892	G-T	Hetero	INTERGENIC
SBS	Chr4	18569676	G-A	Hetero	INTERGENIC
SBS	Chr4	24051945	C-T	Hetero	INTRON
SBS	Chr4	29819116	C-A	Homo	INTRON
SBS	Chr4	29819121	T-A	Homo	INTRON
SBS	Chr6	17779309	G-A	Hetero	INTERGENIC
SBS	Chr6	23975457	G-A	Hetero	INTERGENIC
SBS	Chr7	6682697	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake07g076700
SBS	Chr7	18132157	T-G	Hetero	UTR_3_PRIME
SBS	Chr8	2906814	G-A	Hetero	INTERGENIC
SBS	Chr8	6014547	A-G	Hetero	UTR_5_PRIME
SBS	Chr8	10438283	C-A	Hetero	INTERGENIC
SBS	Chr8	23671189	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g182500
SBS	Chr10	547583	C-T	Hetero	INTERGENIC
SBS	Chr10	547585	G-T	Hetero	INTERGENIC
SBS	Chr10	15548277	G-T	Hetero	INTERGENIC
SBS	Chr10	16139756	T-C	Hetero	INTERGENIC
SBS	Chr10	16527319	A-T	Hetero	INTERGENIC
SBS	Chr10	18314826	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr10	18315398	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g129500
SBS	Chr10	18315399	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr10	21436540	G-A	Hetero	INTERGENIC
SBS	Chr10	21575803	T-C	Hetero	UTR_3_PRIME
SBS	Chr10	24038509	T-C	Hetero	INTERGENIC
SBS	Chr11	6627344	A-G	Homo	INTERGENIC
SBS	Chr11	11833722	A-G	Homo	INTERGENIC
SBS	Chr11	11833723	G-T	Homo	INTERGENIC
SBS	Chr11	14923169	C-T	Homo	INTERGENIC
SBS	Chr11	16185648	C-T	Homo	INTERGENIC
SBS	Chr11	16185649	C-T	Homo	INTERGENIC
SBS	Chr11	19607109	G-A	Hetero	INTERGENIC
SBS	Chr11	26460518	G-A	Homo	INTERGENIC
SBS	Chr11	28214836	A-C	Homo	INTERGENIC
SBS	Chr12	10970666	A-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	2039222	2039232	10
Deletion	Chr9	2049957	2049959	2
Deletion	Chr9	5300528	5300534	6
Deletion	Chr9	7569416	7569418	2
Deletion	Chr6	7730781	7730789	8	OsKitaake06g098500
Deletion	Chr4	8345731	8345798	67
Deletion	Chr7	10598236	10598263	27
Deletion	Chr11	17059862	17059867	5
Deletion	Chr1	17242104	17242106	2
Deletion	Chr2	17557239	17557253	14
Deletion	Chr3	19593240	19593245	5
Deletion	Chr6	20204336	20204384	48
Deletion	Chr1	20405214	20405231	17
Deletion	Chr2	26545414	26545418	4
Deletion	Chr1	34039394	34039395	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	17615154	17786723	2
Inversion	Chr7	17615577	17786720	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes