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| Mutant Information |
|---|
| Mutant Name | FN1122-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1122-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 34
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 6254780 | C-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 7948848 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 13304666 | A-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 24935853 | C-T | Homo | INTERGENIC | |
| SBS | Chr1 | 27945045 | T-A | Homo | INTERGENIC | |
| SBS | Chr1 | 30623210 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 15599068 | A-G | Homo | UTR_3_PRIME | |
| SBS | Chr3 | 6940429 | A-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake03g097800 |
| SBS | Chr3 | 12455334 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 24867239 | G-C | Homo | INTRON | |
| SBS | Chr3 | 31305442 | C-T | Homo | INTRON | |
| SBS | Chr3 | 36000421 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 20553919 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 26457196 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 28226917 | G-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 2219375 | A-G | Homo | UTR_3_PRIME | |
| SBS | Chr6 | 19434801 | G-A | Homo | INTERGENIC | |
| SBS | Chr7 | 1487651 | C-T | Homo | INTERGENIC | |
| SBS | Chr7 | 8476191 | A-G | Homo | SYNONYMOUS_CODING | |
| SBS | Chr7 | 19658847 | T-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 20975196 | G-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 24937278 | G-T | Hetero | INTRON | |
| SBS | Chr7 | 25584611 | T-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 25586503 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 26802485 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 21619285 | A-G | Homo | INTERGENIC | |
| SBS | Chr9 | 914856 | A-G | Homo | INTERGENIC | |
| SBS | Chr9 | 14301424 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 15104541 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 19079634 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 5359763 | G-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 6292834 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 7768193 | A-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 12218708 | A-G | Hetero | INTERGENIC |
Deletions: 7
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr2 | 810957 | 810958 | 1 | OsKitaake02g011300 |
| Deletion | Chr9 | 7853119 | 7853130 | 11 | |
| Deletion | Chr10 | 8366685 | 8366691 | 6 | |
| Deletion | Chr2 | 10248748 | 10248753 | 5 | |
| Deletion | Chr4 | 18828001 | 18842000 | 13999 | OsKitaake04g094600 |
| Deletion | Chr1 | 20962239 | 20962240 | 1 | |
| Deletion | Chr1 | 30301909 | 30301914 | 5 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr2 | 18722210 | 18722213 | 2 | |
| Insertion | Chr4 | 20651275 | 20651278 | 2 | |
| Insertion | Chr5 | 14569030 | 14569033 | 2 | |
| Insertion | Chr8 | 3463875 | 3463877 | 1 | OsKitaake08g038900  |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr8 | 6529525 | 6704326 | |
| Inversion | Chr8 | 6529534 | 6704326 |