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| Mutant Information |
|---|
| Mutant Name | FN1123-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1123-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 25
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 13898883 | C-T | Homo | INTERGENIC | |
| SBS | Chr1 | 19135079 | C-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 24125685 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 39887431 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 41783391 | C-T | Hetero | INTRON | |
| SBS | Chr2 | 35321548 | G-A | Hetero | INTRON | |
| SBS | Chr3 | 8029192 | T-A | Hetero | INTRON | |
| SBS | Chr3 | 27161398 | A-T | Homo | INTERGENIC | |
| SBS | Chr3 | 34429636 | C-A | Homo | INTERGENIC | |
| SBS | Chr3 | 36174252 | C-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 4523087 | T-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 21523461 | C-T | Hetero | INTRON | |
| SBS | Chr4 | 21523464 | G-A | Hetero | INTRON | |
| SBS | Chr4 | 30547863 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 9618509 | G-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 24740428 | A-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 4010135 | C-T | Homo | INTERGENIC | |
| SBS | Chr6 | 4147960 | A-T | Homo | INTERGENIC | |
| SBS | Chr6 | 12571044 | G-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake06g134200 |
| SBS | Chr7 | 4043252 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 18864556 | A-T | Homo | INTERGENIC | |
| SBS | Chr9 | 4813316 | A-T | Homo | INTERGENIC | |
| SBS | Chr9 | 18268679 | G-A | Hetero | UTR_3_PRIME | |
| SBS | Chr9 | 20940558 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 21751310 | A-T | Homo | INTERGENIC |
Deletions: 12
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr6 | 15859 | 15860 | 1 | |
| Deletion | Chr9 | 5245001 | 5249000 | 3999 | |
| Deletion | Chr9 | 5505790 | 5505794 | 4 | |
| Deletion | Chr8 | 6263843 | 6263849 | 6 | |
| Deletion | Chr8 | 9314084 | 9314086 | 2 | OsKitaake08g085200 |
| Deletion | Chr7 | 11738230 | 11738241 | 11 | |
| Deletion | Chr8 | 11972001 | 12021000 | 48999 | 3 |
| Deletion | Chr5 | 12393707 | 12393708 | 1 | |
| Deletion | Chr8 | 22381377 | 22381379 | 2 | |
| Deletion | Chr5 | 24627504 | 24627509 | 5 | |
| Deletion | Chr5 | 26109455 | 26109457 | 2 | |
| Deletion | Chr2 | 29670107 | 29670110 | 3 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr12 | 11718266 | 11718268 | 1 | |
| Insertion | Chr12 | 16857059 | 16857061 | 1 |
Inversions: 9
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr7 | 8544131 | 8735845 | |
| Inversion | Chr7 | 8544160 | 8735856 | |
| Inversion | Chr11 | 9201695 | 9509201 | OsKitaake11g099600 |
| Inversion | Chr4 | 21447897 | 21566701 | OsKitaake04g120000 |
| Inversion | Chr4 | 21447899 | 21566702 | OsKitaake04g120000 |
| Inversion | Chr8 | 24794428 | 25190626 | 2 |
| Inversion | Chr8 | 24794436 | 25190638 | 2 |
| Inversion | Chr1 | 36895155 | 36942316 | OsKitaake01g392900 |
| Inversion | Chr1 | 36904440 | 36942317 |
Translocations: 9
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr11 | 2181969 | Chr1 | 36895161 | 2 |
| Translocation | Chr11 | 2181982 | Chr1 | 36904434 | OsKitaake11g031800 |
| Translocation | Chr3 | 8860268 | Chr2 | 35278843 | OsKitaake02g369700 |
| Translocation | Chr10 | 9909624 | Chr4 | 30587859 | OsKitaake04g235800 |
| Translocation | Chr10 | 9909991 | Chr4 | 30587867 | OsKitaake04g235800 |
| Translocation | Chr10 | 9910013 | Chr8 | 24794436 | OsKitaake08g193850 |
| Translocation | Chr10 | 9910073 | Chr8 | 25190638 | OsKitaake08g196300 |
| Translocation | Chr8 | 11971954 | Chr6 | 25292448 | OsKitaake06g224200 |
| Translocation | Chr8 | 12020337 | Chr6 | 25292434 | 2 |