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Mutant Information

Mutant Name	FN1128-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1128-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 22

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 25150153 G-A Hetero INTERGENIC
SBS Chr2 12482105 G-A Homo INTERGENIC
SBS Chr3 23791540 G-A Homo INTERGENIC
SBS Chr3 28255615 C-T Hetero INTERGENIC
SBS Chr3 29138032 G-A Hetero INTERGENIC
SBS Chr4 32001720 C-A Homo INTERGENIC
SBS Chr5 8066669 G-T Hetero INTERGENIC
SBS Chr5 23661291 T-A Hetero INTERGENIC
SBS Chr5 29310026 T-C Hetero INTRON
SBS Chr6 20631174 G-A Hetero INTERGENIC
SBS Chr7 13818527 G-A Hetero INTERGENIC
SBS Chr8 12570123 C-T Homo INTERGENIC
SBS Chr8 19765171 T-G Hetero INTRON
SBS Chr9 676752 C-G Hetero INTERGENIC
SBS Chr9 18843115 T-C Hetero INTERGENIC
SBS Chr10 625705 T-G Homo INTERGENIC
SBS Chr10 3292180 T-C Hetero INTERGENIC
SBS Chr10 3916408 G-C Hetero INTERGENIC
SBS Chr10 20197544 C-T Homo INTERGENIC
SBS Chr10 20197545 A-T Homo INTERGENIC
SBS Chr11 10028301 C-T Hetero INTERGENIC
SBS Chr12 9433235 C-T Hetero INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 4831893 4831895 2
Deletion Chr9 5114288 5114434 146
Deletion Chr9 9209001 9297000 87999 5
Deletion Chr1 9939359 9939363 4
Deletion Chr7 22870001 22880000 9999 4
Deletion Chr6 23444694 23444695 1
Deletion Chr7 23495001 23717000 221999 27
Deletion Chr4 25468108 25468109 1
Deletion Chr11 26846899 26846915 16
Deletion Chr1 29492387 29492388 1 OsKitaake01g289000

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr9 4556170 4556173 2
Insertion Chr2 35360528 35360531 2
Insertion Chr4 2898788 2898791 2
Insertion Chr4 4414990 4414992 1
Insertion Chr7 11037064 11037067 2
Insertion Chr10 22567317 22567320 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 4841218 4874769
Inversion Chr10 4841223 4874778
Inversion Chr5 25100005 25107033
Inversion Chr5 25100011 25107040

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 11625036 Chr7 23708002
Translocation Chr11 26495720 Chr7 23709564
Translocation Chr11 26496117 Chr7 23489090 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	25150153	G-A	Hetero	INTERGENIC
SBS	Chr2	12482105	G-A	Homo	INTERGENIC
SBS	Chr3	23791540	G-A	Homo	INTERGENIC
SBS	Chr3	28255615	C-T	Hetero	INTERGENIC
SBS	Chr3	29138032	G-A	Hetero	INTERGENIC
SBS	Chr4	32001720	C-A	Homo	INTERGENIC
SBS	Chr5	8066669	G-T	Hetero	INTERGENIC
SBS	Chr5	23661291	T-A	Hetero	INTERGENIC
SBS	Chr5	29310026	T-C	Hetero	INTRON
SBS	Chr6	20631174	G-A	Hetero	INTERGENIC
SBS	Chr7	13818527	G-A	Hetero	INTERGENIC
SBS	Chr8	12570123	C-T	Homo	INTERGENIC
SBS	Chr8	19765171	T-G	Hetero	INTRON
SBS	Chr9	676752	C-G	Hetero	INTERGENIC
SBS	Chr9	18843115	T-C	Hetero	INTERGENIC
SBS	Chr10	625705	T-G	Homo	INTERGENIC
SBS	Chr10	3292180	T-C	Hetero	INTERGENIC
SBS	Chr10	3916408	G-C	Hetero	INTERGENIC
SBS	Chr10	20197544	C-T	Homo	INTERGENIC
SBS	Chr10	20197545	A-T	Homo	INTERGENIC
SBS	Chr11	10028301	C-T	Hetero	INTERGENIC
SBS	Chr12	9433235	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	4831893	4831895	2
Deletion	Chr9	5114288	5114434	146
Deletion	Chr9	9209001	9297000	87999	5
Deletion	Chr1	9939359	9939363	4
Deletion	Chr7	22870001	22880000	9999	4
Deletion	Chr6	23444694	23444695	1
Deletion	Chr7	23495001	23717000	221999	27
Deletion	Chr4	25468108	25468109	1
Deletion	Chr11	26846899	26846915	16
Deletion	Chr1	29492387	29492388	1	OsKitaake01g289000

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	4841218	4874769
Inversion	Chr10	4841223	4874778
Inversion	Chr5	25100005	25107033
Inversion	Chr5	25100011	25107040

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes