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| Mutant Information |
|---|
| Mutant Name | FN1129-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1129-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 27
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 12192992 | G-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 12192993 | A-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 29711817 | G-A | Homo | INTERGENIC | |
| SBS | Chr1 | 37326512 | A-C | Homo | INTRON | |
| SBS | Chr2 | 234553 | A-G | Homo | INTERGENIC | |
| SBS | Chr2 | 30067678 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 7743846 | G-A | Hetero | INTRON | |
| SBS | Chr3 | 11886372 | A-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 21447357 | A-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 36583601 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 7420404 | T-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 12103404 | T-C | Hetero | INTRON | |
| SBS | Chr5 | 7839048 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 25885721 | G-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 24436546 | T-G | Homo | INTRON | |
| SBS | Chr6 | 25892567 | C-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 4666211 | C-A | Homo | INTRON | |
| SBS | Chr7 | 18509619 | A-G | Hetero | INTRON | |
| SBS | Chr8 | 5236995 | C-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 9681932 | A-T | Hetero | INTRON | |
| SBS | Chr8 | 22314019 | G-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 27665080 | A-T | Hetero | UTR_3_PRIME | |
| SBS | Chr9 | 3402126 | A-G | Hetero | UTR_3_PRIME | |
| SBS | Chr10 | 14623268 | C-T | Homo | INTERGENIC | |
| SBS | Chr11 | 12776175 | C-A | Homo | INTERGENIC | |
| SBS | Chr11 | 14869039 | A-C | Homo | INTERGENIC | |
| SBS | Chr12 | 2037834 | T-G | Homo | INTERGENIC |
Deletions: 7
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr9 | 3402112 | 3402114 | 2 | |
| Deletion | Chr5 | 7613589 | 7613590 | 1 | |
| Deletion | Chr5 | 21356165 | 21356169 | 4 | |
| Deletion | Chr12 | 23138738 | 23138741 | 3 | |
| Deletion | Chr6 | 23357651 | 23357652 | 1 | |
| Deletion | Chr3 | 27484333 | 27484334 | 1 | OsKitaake03g283700 |
| Deletion | Chr2 | 34100001 | 34285000 | 184999 | 20 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr10 | 23539072 | 23539075 | 2 | |
| Insertion | Chr8 | 11785930 | 11785932 | 1 |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr3 | 11531695 | 11551018 | OsKitaake03g156800 |
Translocations: 5
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr12 | 2472960 | Chr2 | 34285586 | OsKitaake02g356300 |
| Translocation | Chr12 | 2472964 | Chr2 | 34286248 | OsKitaake02g356300 |
| Translocation | Chr11 | 7914062 | Chr4 | 12547787 | OsKitaake11g087700 |
| Translocation | Chr11 | 8298193 | Chr4 | 12547765 | OsKitaake11g090900 |
| Translocation | Chr9 | 11117764 | Chr3 | 11531696 | OsKitaake03g156800 |