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| Mutant Information |
|---|
| Mutant Name | FN1131-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1131-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 22
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 393895 | G-A | Hetero | INTRON | |
| SBS | Chr1 | 5659305 | T-A | Hetero | INTRON | |
| SBS | Chr1 | 28246272 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 30133926 | G-T | Homo | INTERGENIC | |
| SBS | Chr2 | 1266385 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 9144343 | G-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 18666157 | T-A | Homo | INTERGENIC | |
| SBS | Chr2 | 24905766 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 1940343 | A-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 28206046 | T-C | Hetero | INTRON | |
| SBS | Chr3 | 33709610 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 32203194 | G-A | Homo | INTRON | |
| SBS | Chr5 | 6684987 | T-C | Homo | INTERGENIC | |
| SBS | Chr5 | 21205437 | T-A | Homo | INTERGENIC | |
| SBS | Chr6 | 16965949 | T-A | Hetero | INTRON | |
| SBS | Chr6 | 22280287 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 4721475 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 8662569 | G-C | Homo | INTRON | |
| SBS | Chr8 | 15582890 | G-A | Homo | INTERGENIC | |
| SBS | Chr10 | 10334010 | A-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 14402449 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 14241020 | G-C | Homo | INTERGENIC |
Deletions: 12
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr9 | 3941787 | 3941790 | 3 | OsKitaake09g020900 |
| Deletion | Chr4 | 7794714 | 7794726 | 12 | |
| Deletion | Chr12 | 11652227 | 11652538 | 311 | |
| Deletion | Chr12 | 11874616 | 11874621 | 5 | |
| Deletion | Chr4 | 16364491 | 16364494 | 3 | |
| Deletion | Chr1 | 18319526 | 18319528 | 2 | |
| Deletion | Chr5 | 20245528 | 20245546 | 18 | |
| Deletion | Chr2 | 22074356 | 22074360 | 4 | |
| Deletion | Chr8 | 23387915 | 23387930 | 15 | |
| Deletion | Chr5 | 24645265 | 24645267 | 2 | |
| Deletion | Chr2 | 27174283 | 27174288 | 5 | |
| Deletion | Chr1 | 32277970 | 32277971 | 1 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr4 | 1746999 | 1851894 | OsKitaake04g012300 |
| Inversion | Chr4 | 1747013 | 1851936 | OsKitaake04g012300 |
Translocations: 6
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr10 | 19112305 | Chr4 | 19007713 | OsKitaake10g137500 |
| Translocation | Chr10 | 19112510 | Chr4 | 19007545 | OsKitaake10g137500 |
| Translocation | Chr10 | 19146298 | Chr5 | 20483206 | |
| Translocation | Chr10 | 19146304 | Chr5 | 20477005 | |
| Translocation | Chr5 | 20476444 | Chr1 | 3815019 | OsKitaake01g051500 |
| Translocation | Chr5 | 20476969 | Chr1 | 3815007 | OsKitaake01g051500 |