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Mutant Information

Mutant Name	FN1133-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1133-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 26

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2051978 C-A Homo NON_SYNONYMOUS_CODING OsKitaake01g025600
SBS Chr1 11673637 G-A Homo NON_SYNONYMOUS_CODING OsKitaake01g140800
SBS Chr1 17680573 C-T Hetero INTRON
SBS Chr1 30019660 C-A Hetero INTERGENIC
SBS Chr1 33057305 A-C Hetero SYNONYMOUS_CODING
SBS Chr2 27483622 G-A Homo INTERGENIC
SBS Chr2 29987900 C-T Hetero INTRON
SBS Chr2 30764896 T-C Hetero INTERGENIC
SBS Chr3 14976088 C-A Hetero UTR_3_PRIME
SBS Chr3 19197810 G-C Hetero INTERGENIC
SBS Chr4 29605091 G-A Homo INTERGENIC
SBS Chr4 36015067 C-T Homo NON_SYNONYMOUS_CODING OsKitaake04g309800
SBS Chr5 10322933 C-T Hetero INTERGENIC
SBS Chr6 7185172 G-T Hetero SYNONYMOUS_CODING
SBS Chr6 7185173 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake06g092700
SBS Chr6 22882623 G-T Hetero INTERGENIC
SBS Chr7 16057728 C-A Hetero SYNONYMOUS_CODING
SBS Chr7 28689828 T-A Homo INTERGENIC
SBS Chr8 2620888 G-C Hetero INTERGENIC
SBS Chr8 25330909 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake08g198300
SBS Chr9 5233001 T-A Hetero INTRON
SBS Chr9 16654934 A-G Hetero SYNONYMOUS_CODING
SBS Chr9 18497681 G-A Hetero INTERGENIC
SBS Chr10 5498721 T-A Hetero INTERGENIC
SBS Chr10 21173424 C-A Hetero INTERGENIC
SBS Chr11 9620670 G-A Hetero INTERGENIC

Deletions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 457015 457017 2
Deletion Chr12 1826348 1826401 53
Deletion Chr7 15175464 15175465 1
Deletion Chr5 29401543 29401555 12
Deletion Chr3 31480938 31480941 3

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 223295 223299 3 OsKitaake01g003100
Insertion Chr8 17352396 17352399 2
Insertion Chr8 19930653 19930656 2
Insertion Chr12 6580688 6580691 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2051978	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g025600
SBS	Chr1	11673637	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g140800
SBS	Chr1	17680573	C-T	Hetero	INTRON
SBS	Chr1	30019660	C-A	Hetero	INTERGENIC
SBS	Chr1	33057305	A-C	Hetero	SYNONYMOUS_CODING
SBS	Chr2	27483622	G-A	Homo	INTERGENIC
SBS	Chr2	29987900	C-T	Hetero	INTRON
SBS	Chr2	30764896	T-C	Hetero	INTERGENIC
SBS	Chr3	14976088	C-A	Hetero	UTR_3_PRIME
SBS	Chr3	19197810	G-C	Hetero	INTERGENIC
SBS	Chr4	29605091	G-A	Homo	INTERGENIC
SBS	Chr4	36015067	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g309800
SBS	Chr5	10322933	C-T	Hetero	INTERGENIC
SBS	Chr6	7185172	G-T	Hetero	SYNONYMOUS_CODING
SBS	Chr6	7185173	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g092700
SBS	Chr6	22882623	G-T	Hetero	INTERGENIC
SBS	Chr7	16057728	C-A	Hetero	SYNONYMOUS_CODING
SBS	Chr7	28689828	T-A	Homo	INTERGENIC
SBS	Chr8	2620888	G-C	Hetero	INTERGENIC
SBS	Chr8	25330909	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g198300
SBS	Chr9	5233001	T-A	Hetero	INTRON
SBS	Chr9	16654934	A-G	Hetero	SYNONYMOUS_CODING
SBS	Chr9	18497681	G-A	Hetero	INTERGENIC
SBS	Chr10	5498721	T-A	Hetero	INTERGENIC
SBS	Chr10	21173424	C-A	Hetero	INTERGENIC
SBS	Chr11	9620670	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	457015	457017	2
Deletion	Chr12	1826348	1826401	53
Deletion	Chr7	15175464	15175465	1
Deletion	Chr5	29401543	29401555	12
Deletion	Chr3	31480938	31480941	3

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes