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| Mutant Information |
|---|
| Mutant Name | FN1134-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1134-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 25
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 6211984 | G-T | Hetero | INTRON | |
| SBS | Chr1 | 11493634 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 19197478 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 13587238 | C-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 2322292 | A-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 15170677 | T-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 26242676 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 27154210 | C-T | Hetero | UTR_3_PRIME | |
| SBS | Chr4 | 1594284 | A-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 5823954 | C-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 5823956 | T-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 24818497 | G-T | Homo | INTERGENIC | |
| SBS | Chr5 | 456534 | T-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 918212 | A-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 10259799 | G-A | Homo | INTERGENIC | |
| SBS | Chr5 | 21829792 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 2351860 | T-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 7492158 | C-A | Hetero | UTR_5_PRIME | |
| SBS | Chr6 | 20243110 | G-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 1744536 | C-A | Hetero | STOP_GAINED | OsKitaake07g024400 |
| SBS | Chr9 | 3777912 | C-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 3980603 | T-C | Homo | INTERGENIC | |
| SBS | Chr12 | 13929244 | C-A | Homo | INTERGENIC | |
| SBS | Chr12 | 18210766 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 18210767 | C-A | Homo | INTERGENIC |
Deletions: 7
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr12 | 3882172 | 3882179 | 7 | |
| Deletion | Chr4 | 4024632 | 4024633 | 1 | |
| Deletion | Chr5 | 10125408 | 10125414 | 6 | |
| Deletion | Chr11 | 17281940 | 17281942 | 2 | |
| Deletion | Chr4 | 18197572 | 18197575 | 3 | |
| Deletion | Chr9 | 18222001 | 18754000 | 531999 | 83 |
| Deletion | Chr2 | 32648998 | 32648999 | 1 | OsKitaake02g334100 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 20847101 | 20847105 | 3 | |
| Insertion | Chr2 | 32643895 | 32643898 | 2 | |
| Insertion | Chr6 | 167322 | 167325 | 2 |
Translocations: 3
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr12 | 11747416 | Chr1 | 37798333 | OsKitaake01g403500 |
| Translocation | Chr12 | 11747628 | Chr1 | 37798333 | OsKitaake01g403500 |
| Translocation | Chr12 | 18645651 | Chr1 | 13805302 |